Browse Element(s) Details


Os.9618.1.S1_at

Description gb:AK106305.1
DB_XREF= gi:32991514
TID=Os.9618.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9618 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-101-C09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-101-C09, full insert sequence.
FL= gb:AK106305.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5951011/11PHD finger transcription factor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g59470OsAffx.14479.1.S1_at11/114+35139528..35140385No apical meristem protein, expressed
LOC_Os04g59480OsAffx.14480.1.S1_at11/114+35140985..35144392POT family protein, expressed
LOC_Os04g59494Os.2242.1.S1_at11/114+35150057..35163433importin beta-2 subunit family protein, putative, expressed
LOC_Os04g59494Os.35077.1.S1_s_at11/114+35150057..35163433importin beta-2 subunit family protein, putative, expressed
LOC_Os04g59510Os.9618.1.S1_at11/114+35163816..35171348PHD finger transcription factor, putative, expressed
LOC_Os04g59510OsAffx.14481.1.S1_at9/114+35163816..35171348PHD finger transcription factor, putative, expressed
LOC_Os04g59510Os.28544.1.S1_at1/114+35163816..35171348PHD finger transcription factor, putative, expressed
LOC_Os04g59520Os.4621.1.S1_at11/114+35179775..35183477C2 domain-containing protein, putative, expressed
LOC_Os04g59520Os.4621.1.S1_s_at11/114+35179775..35183477C2 domain-containing protein, putative, expressed
LOC_Os04g59520OsAffx.26668.1.S1_at11/114+35179775..35183477C2 domain-containing protein, putative, expressed
LOC_Os04g59520OsAffx.30059.2.S1_x_at1/114+35179775..35183477C2 domain-containing protein, putative, expressed
LOC_Os04g59530Os.47463.1.S1_x_at2/114+35185197..35186475transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g59530Os.14491.2.S1_x_at2/114+35185197..35186475transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g59540Os.52597.1.S1_at11/114+35194225..35199766Phosphatidylinositol-4-phosphate 5-Kinase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9618.1.S1_at--417--2391Chr04:35164909..35164933 (25 bp)
AAACTAATGCAATTTCGTCCTCGAA
LOC_Os04g59510
Os.9618.1.S1_at--242--9371Chr04:35164275..35164295 (21 bp)
TCGAGACAAGTATCACAATGCTGGT
LOC_Os04g59510
Os.9618.1.S1_at--548--1311Chr04:35164231..35164255 (25 bp)
AGATGTTTCATTTGAGTCTTCCTCT
LOC_Os04g59510
Os.9618.1.S1_at--960--6691Chr04:35164195..35164219 (25 bp)
GTTCCTGCCTGCCTGGTAATTTTGA
LOC_Os04g59510
Os.9618.1.S1_at--668--4571Chr04:35164154..35164178 (25 bp)
GCGCGTCGCATTGCAGTGGAGATTT
LOC_Os04g59510
Os.9618.1.S1_at--93--1271Chr04:35164135..35164159 (25 bp)
AGATTTTCCTTTGCTGGTCTGCAGC
LOC_Os04g59510
Os.9618.1.S1_at--440--7171Chr04:35164119..35164143 (25 bp)
GTCTGCAGCCAGAGATTAGTTTTCT
LOC_Os04g59510
Os.9618.1.S1_at--717--10051Chr04:35164103..35164127 (25 bp)
TAGTTTTCTCACACCTGATACATCC
LOC_Os04g59510
Os.9618.1.S1_at--759--9311Chr04:35164081..35164105 (25 bp)
TCCCGGGCCATCAAATCTTGCAAGT
LOC_Os04g59510
Os.9618.1.S1_at--755--1611Chr04:35163954..35163978 (25 bp)
AGCTGTTCATGCGTTTCTTGCACAT
LOC_Os04g59510
Os.9618.1.S1_at--962--10231Chr04:35163905..35163929 (25 bp)
TTTGTACTTGGATGGGCAACACGAC
LOC_Os04g59510
Target Sequence 
AAACTAATGCAATTTCGTCCTCGAAACAAGCACAGATACCAAGCTATCGAGACAAGTATCACAATGCTGGTGATCAACAG
ATCATTTGTCAGATGTTTCATTTGAGTCTTCCTCTTCCTGGGTGCAGTTCCTGCCTGCCTGGTAATTTTGATCAGCTGCT
GGGGCTGGCGCGTCGCATTGCAGTGGAGATTTTCCTTTGCTGGTCTGCAGCCAGAGATTAGTTTTCTCACACCTGATACA
TCCCGGGCCATCAAATCTTGCAAGTTACTTACAGTAGTAGTACTACACTAGAGAAGTTTTTCCGAACCAAAGAATACTAC
TATTTAGATTGTTACAAGGCAAGTATTTTTTTGCCAATTTAACATGCAGCTGTTCATGCGTTTCTTGCACATTGGAAATC
AAAACGTTGATTCGTATTTGTACTTGGATGGGCAACACGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9618.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis