Browse Element(s) Details


Os.9639.1.S1_at

Description gb:AK103125.1
DB_XREF= gi:32988334
TID=Os.9639.1
CNT=17
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9639 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033119M03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033119M03, full insert sequence.
FL= gb:AK059938.1 gb:AK103125.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3503911/11NAD dependent epimerase/dehydratase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g35010OsAffx.12356.1.S1_at11/112+20996624..21002341mitogen-activated kinase kinase kinase alpha, putative, expressed
LOC_Os02g35020OsAffx.24582.1.S1_at11/112+21008921..21012083glycogenin-like starch initiation protein, putative, expressed
LOC_Os02g35039Os.9639.1.S1_at11/112+21021861..21032924NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os02g35039OsAffx.12357.1.S1_at11/112+21021861..21032924NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os02g35039Os.57570.1.S1_at1/112+21021861..21032924NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os02g35060OsAffx.24583.1.S1_at11/112+21033759..21036768RNA methylase family UPF0020 containing protein, putative, expressed
LOC_Os02g35070Os.17120.1.S1_at11/112+21037966..21044468SPRY domain containing protein, expressed
LOC_Os02g35080Os.7797.1.S1_at11/112+21048583..21054521T-complex protein 11 containing protein, expressed
LOC_Os02g35090Os.53808.1.S1_x_at11/112+21053532..21055687expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9639.1.S1_at--902--8871Chr02:21032286..21032310 (25 bp)
TGAGGCCTGGTTTTATTCATGGAAC
LOC_Os02g35039
Os.9639.1.S1_at--1072--5451Chr02:21032307..21032331 (25 bp)
GAACTCGCCGTGTCGGTAGCGTAAA
LOC_Os02g35039
Os.9639.1.S1_at--208--311Chr02:21032333..21032357 (25 bp)
ATACCTCTTGGACTTGTTGGTTCTC
LOC_Os02g35039
Os.9639.1.S1_at--46--7891Chr02:21032351..21032470 (25 bp)
GGTTCTCCTATGCAAATGGTTCTCC
LOC_Os02g35039
Os.9639.1.S1_at--1120--5411Chr02:21032498..21032522 (25 bp)
GAAGCCGTTGACGAGATTGCCGCTG
LOC_Os02g35039
Os.9639.1.S1_at--998--8831Chr02:21032591..21032615 (25 bp)
TGATCCAGTGTTTCCTCCGGGTATT
LOC_Os02g35039
Os.9639.1.S1_at--964--1931Chr02:21032626..21032650 (25 bp)
ACGGCATCATGCGATACAGTGACCA
LOC_Os02g35039
Os.9639.1.S1_at--7--6251Chr02:21032712..21032736 (25 bp)
GATGTGGCTGGCACGTTAGACTTTT
LOC_Os02g35039
Os.9639.1.S1_at--770--10271Chr02:21032734..21032758 (25 bp)
TTTGCGCTTGTTTCGTTTTCATAGA
LOC_Os02g35039
Os.9639.1.S1_at--594--3051Chr02:21032832..21032856 (25 bp)
AATCGTATCATGCTCACCATGTTTG
LOC_Os02g35039
Os.9639.1.S1_at--469--4011Chr02:21032879..21032903 (25 bp)
CGTCCATGTTGCATCTGAAGTTTTT
LOC_Os02g35039
Target Sequence 
TGAGGCCTGGTTTTATTCATGGAACTCGCCGTGTCGGTAGCGTAAAAATACCTCTTGGACTTGTTGGTTCTCCTATGCAA
ATGGTTCTCCAAAGTGCGAAGCCGTTGACGAGATTGCCGCTGGTTGGCCCACTGTTGACCCCTCCAGTGAGTGTTGCCTC
CGTGGCGAAGGTCGCTGTAAGAGCAGCAACTGATCCAGTGTTTCCTCCGGGTATTGTTGATGTGTACGGCATCATGCGAT
ACAGTGACCAGAAGTAGAAGTAATAAATATTACACCGGATCATACAAATTCTATCTCCGAATGAATAAGCAGATGTGGCT
GGCACGTTAGACTTTTGCGCTTGTTTCGTTTTCATAGATTTTTACAGTTAGTAGGGGAACCTTATTTAACTGATCCATGT
CAATCAGTGGTGAAGATGTATATAGTAAATAAATCGTATCATGCTCACCATGTTTGATTGCAGTCAANNANNNNNNNNCG
TCCATGTTGCATCTGAAGTTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9639.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis