Browse Element(s) Details


Os.9729.3.S1_a_at

Description gb:AK062140.1
DB_XREF= gi:32972158
TID=Os.9729.3
CNT=23
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.9729 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) ESTs C99736(E21196),AU030984(E60527), AU030985(E60527) correspond to a region of the predicted gene.~Similar to Arabidopsis thaliana BAC IG002N01; A. thaliana cDNA T20924. (AF007269) (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-045-G03, full insert sequence.
FL= gb:AK072638.1 gb:AK062140.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0168011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g01640Os.49738.1.S1_at11/116+374706..381665Protein arginine N-methyltransferase, putative, expressed
LOC_Os06g01650Os.22256.2.S1_x_at11/116+386223..392012expressed protein
LOC_Os06g01650Os.22256.1.S1_at11/116+386223..392012expressed protein
LOC_Os06g01650Os.22256.2.S1_at11/116+386223..392012expressed protein
LOC_Os06g01650Os.44933.1.S1_at3/116+386223..392012expressed protein
LOC_Os06g01650Os.44933.2.S1_x_at2/116+386223..392012expressed protein
LOC_Os06g01650Os.44933.2.S1_at2/116+386223..392012expressed protein
LOC_Os06g01660Os.44872.1.S1_at11/116+393580..396914Integral membrane protein DUF6 containing protein, expressed
LOC_Os06g01660Os.44872.2.S1_x_at11/116+393580..396914Integral membrane protein DUF6 containing protein, expressed
LOC_Os06g01670Os.23936.1.S1_at11/116+397679..402494myb family transcription factor, putative, expressed
LOC_Os06g01680Os.9729.3.S1_a_at11/116+402739..409270expressed protein
LOC_Os06g01690Os.32187.1.S1_at11/116+409926..412035Septum site-determining protein minD, putative, expressed
LOC_Os06g01700Os.19955.1.S1_at11/116+412319..415043Cwf15/Cwc15 cell cycle control protein, expressed
LOC_Os06g01700Os.19955.1.S2_at11/116+412319..415043Cwf15/Cwc15 cell cycle control protein, expressed
LOC_Os06g01710OsAffx.10379.1.A1_at10/116+415531..419161expressed protein
LOC_Os06g01720Os.50408.1.S1_at11/116+419781..424168expressed protein
LOC_Os06g01730OsAffx.29607.2.S1_s_at11/116+425064..429602hypothetical protein
LOC_Os06g01740NANA6+429838..433798hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9729.3.S1_a_at--466--851Chr06:408265..408592 (25 bp)
ATGGCAGGTCCATCAGGTCCAGAAC
LOC_Os06g01680
Os.9729.3.S1_a_at--689--1031Chr06:408573..408597 (25 bp)
AGGTCCATCAGGTCCAGAACTGAGA
LOC_Os06g01680
Os.9729.3.S1_a_at--57--3071Chr06:408601..408625 (25 bp)
AATCACCCAGATGCCTTTGAAAGGT
LOC_Os06g01680
Os.9729.3.S1_a_at--214--9191Chr06:408612..408636 (25 bp)
TGCCTTTGAAAGGTTTCTCCAGATG
LOC_Os06g01680
Os.9729.3.S1_a_at--735--9491Chr06:408627..408651 (25 bp)
TCTCCAGATGGAGCTTACAGCCAGA
LOC_Os06g01680
Os.9729.3.S1_a_at--649--10451Chr06:408641..408665 (25 bp)
TTACAGCCAGATCCAAGCAGATGCA
LOC_Os06g01680
Os.9729.3.S1_a_at--378--3231Chr06:408654..408678 (25 bp)
CAAGCAGATGCACCCAGCAATGGCT
LOC_Os06g01680
Os.9729.3.S1_a_at--680--751Chr06:408683..408707 (25 bp)
ATGTACCTGGCGGCATGTACGGGCC
LOC_Os06g01680
Os.9729.3.S1_a_at--718--8751Chr06:408698..408722 (25 bp)
TGTACGGGCCCGAGCTTGACATGAA
LOC_Os06g01680
Os.9729.3.S1_a_at--538--7551Chr06:408703..408727 (25 bp)
GGGCCCGAGCTTGACATGAACTTGA
LOC_Os06g01680
Os.9729.3.S1_a_at--75--5931Chr06:408709..408733 (25 bp)
GAGCTTGACATGAACTTGAGATACA
LOC_Os06g01680
Target Sequence 
ATGGCAGGTCCATCAGGTCCAGAACTGAGAGGCNAATCACCCAGATGCCTTTGAAAGGTTTCTCCAGATGGAGCTTACAG
CCAGATCCAAGCAGATGCACCCAGCAATGGCTGNNCATGTACCTGGCGGCATGTACGGGCCCGAGCTTGACATGAACTTG
AGATACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9729.3.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis