Browse Element(s) Details


Os.9806.1.S1_at

Description gb:AK104979.1
DB_XREF= gi:32990188
TID=Os.9806.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.9806 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-124-C04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-124-C04, full insert sequence.
FL= gb:AK104979.1 gb:AK073099.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4629011/11UPF0326 protein hag1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g46250Os.30193.1.S1_at11/114+27189894..27191292AP2 domain containing protein, expressed
LOC_Os04g46260NANA4+27197086..27197448hypothetical protein
LOC_Os04g46270OsAffx.26483.1.S1_x_at11/114+27201122..27203297hypothetical protein
LOC_Os04g46270OsAffx.22651.1.S1_x_at3/114+27201122..27203297hypothetical protein
LOC_Os04g46270Os.49487.1.S1_at1/114+27201122..27203297hypothetical protein
LOC_Os04g46280Os.14384.1.S1_at11/114+27204350..27207121Nudix hydrolase 8, putative, expressed
LOC_Os04g46290Os.9806.1.S1_at11/114+27207659..27210781UPF0326 protein hag1, putative, expressed
LOC_Os04g46300Os.52210.1.S1_at11/114+27211750..27215414NB-ARC domain containing protein
LOC_Os04g46300OsAffx.32256.1.S1_x_at1/114+27211750..27215414NB-ARC domain containing protein
LOC_Os04g46300Os.47372.1.S1_x_at1/114+27211750..27215414NB-ARC domain containing protein
LOC_Os04g46310OsAffx.14296.1.S1_at11/114+27225370..27240995HEAT repeat family protein, expressed
LOC_Os04g46310Os.24616.1.S1_s_at11/114+27225370..27240995HEAT repeat family protein, expressed
LOC_Os04g46310Os.24616.1.S2_at10/114+27225370..27240995HEAT repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9806.1.S1_at--711--1191Chr04:27209330..27209354 (25 bp)
AGTTTCTGCAGTTAGACACGTCCCA
LOC_Os04g46290
Os.9806.1.S1_at--613--2471Chr04:27209354..27209568 (25 bp)
AACACATCCTGCATTTTCTGATGAT
LOC_Os04g46290
Os.9806.1.S1_at--419--3251Chr04:27210324..27210348 (25 bp)
CAACCATCGAGCTTCATTCTATAGA
LOC_Os04g46290
Os.9806.1.S1_at--1066--8171Chr04:27210383..27210407 (25 bp)
GGCAAACTTTTGTGTTCCGTGGCAG
LOC_Os04g46290
Os.9806.1.S1_at--111--6911Chr04:27210432..27210456 (25 bp)
GTATCTAGCATCGAAGCGCTTCTCT
LOC_Os04g46290
Os.9806.1.S1_at--796--1971Chr04:27210468..27210492 (25 bp)
ACTGCAATGTGCAAAGTCCTGGCAA
LOC_Os04g46290
Os.9806.1.S1_at--448--2291Chr04:27210491..27210515 (25 bp)
AAATGTTGCCACCTTTCCTGGCAGT
LOC_Os04g46290
Os.9806.1.S1_at--816--1931Chr04:27210529..27210553 (25 bp)
ACGGAACTGACACTGAGCCGTCGAT
LOC_Os04g46290
Os.9806.1.S1_at--1067--1671Chr04:27210544..27210568 (25 bp)
AGCCGTCGATCCTGAATCCATATAG
LOC_Os04g46290
Os.9806.1.S1_at--584--6211Chr04:27210613..27210637 (25 bp)
GAGGCGGCCACAGCATATGTTGTAA
LOC_Os04g46290
Os.9806.1.S1_at--812--10051Chr04:27210645..27210669 (25 bp)
TAGTGCCGTATAGCCTTAAGACAGT
LOC_Os04g46290
Target Sequence 
AGTTTCTGCAGTTAGACACGTCCCAACACATCCTGCATTTTCTGATGATGATATGGATTCAAGATCTTGTTCTATTAGTG
GGGACAGTGATGTGGATNAGCTGGACCAACACCTGCTGTCAGCAACAACCATCGAGCTTCATTCTATAGAACACCAAAGC
TAGCCAAAAATGATATCTGACATCGGCAAACTTTTGTGTTCCGTGGCAGNGACAGTTGAAGACTTCAATTCCTGTATCTA
GCATCGAAGCGCTTCTCTCGTGCTCCACTACTGCAATGTGCAAAGTCCTGGCAAATGTTGCCACCTTTCCTGGCAGTGTT
GCTAGCAGAGACGGAACTGACACTGAGCCGTCGATCCTGAATCCATATAGCGCATGCTAATATGGAAATCATACCTGCGA
TATAGGGCAATGCTGAGGCGGCCACAGCATATGTTGTAACACAAACTAGTGCCGTATAGCCTTAAGACAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9806.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis