Browse Element(s) Details


Os.9878.1.S1_at

Description gb:AK072121.1
DB_XREF= gi:32982144
TID=Os.9878.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9878 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013122J23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013122J23, full insert sequence.
FL= gb:AK072121.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4019011/11Phospholipase D alpha 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g40170Os.50455.1.S1_at11/116+23907921..23912799Phospholipase D alpha 2, putative, expressed
LOC_Os06g40180Os.50104.1.S1_at11/116+23920943..23923922Phospholipase D alpha 2, putative, expressed
LOC_Os06g40190Os.9878.1.S1_at11/116+23927716..23931373Phospholipase D alpha 2, putative, expressed
LOC_Os06g40200Os.26881.1.A1_a_at11/116+23934986..23941378Mitochondrial carrier protein, expressed
LOC_Os06g40200Os.26881.1.A2_a_at11/116+23934986..23941378Mitochondrial carrier protein, expressed
LOC_Os06g40210Os.18300.1.S1_at11/116+23948822..23949683expressed protein
LOC_Os06g40220OsAffx.28020.1.S1_at10/116+23955154..23957721F-box domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006631biological_processfatty acid metabolism
GO:0009816biological_processdefense response to pathogenic bacteria, incompatible interaction
GO:0005634cellular_componentnucleus
GO:0005739cellular_componentmitochondrion
GO:0005886cellular_componentplasma membrane
GO:0016020cellular_componentmembrane
GO:0030136cellular_componentclathrin-coated vesicle
GO:0004630molecular_functionphospholipase D activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9878.1.S1_at--726--9311Chr06:23930802..23930826 (25 bp)
TCCCTTTCTCACCACATAGAGTAGC
LOC_Os06g40190
Os.9878.1.S1_at--319--9731Chr06:23930847..23930871 (25 bp)
TAATTGGAAACCTTGCACTGTTGGG
LOC_Os06g40190
Os.9878.1.S1_at--491--1951Chr06:23930863..23930887 (25 bp)
ACTGTTGGGTGGTGCTTCTAGATAT
LOC_Os06g40190
Os.9878.1.S1_at--153--1271Chr06:23930882..23930906 (25 bp)
AGATATGTAATTTCCAGCCCAATAA
LOC_Os06g40190
Os.9878.1.S1_at--981--8731Chr06:23930912..23930936 (25 bp)
TGTCACGCCTATTTCTAGTCAAAAT
LOC_Os06g40190
Os.9878.1.S1_at--32--731Chr06:23930974..23930998 (25 bp)
ATGATTTTCCTCATGGGAGTACTGA
LOC_Os06g40190
Os.9878.1.S1_at--481--7851Chr06:23931115..23931139 (25 bp)
GGTTTTACCTGTGGGATTCAAGACA
LOC_Os06g40190
Os.9878.1.S1_at--641--7511Chr06:23931150..23931174 (25 bp)
GTGGTTGTCAGCTACACATGGTCAA
LOC_Os06g40190
Os.9878.1.S1_at--956--2111Chr06:23931165..23931189 (25 bp)
ACATGGTCAATGTGCCTGTCTGGAG
LOC_Os06g40190
Os.9878.1.S1_at--121--2571Chr06:23931206..23931230 (25 bp)
AACTGTATATCTCCTTTCCAATCTT
LOC_Os06g40190
Os.9878.1.S1_at--990--9571Chr06:23931261..23931285 (25 bp)
TCTTGAGTCAAACCATGCTGCTTTC
LOC_Os06g40190
Target Sequence 
TCCCTTTCTCACCACATAGAGTAGCAAGATTCAGATTGTGCTGCATAATTGGAAACCTTGCACTGTTGGGTGGTGCTTCT
AGATATGTAATTTCCAGCCCAATAATAGGGTGTCACGCCTATTTCTAGTCAAAATTTGGTTGATCAGTTGATGCTATTCT
TTTGCACGAATCATGATTTTCCTCATGGGAGTACTGAAATAATAGGCATGTTTTGTTGGAGATTTGACCTGAATATACAT
ACTACTGAAGTCTTGGACAACTTGGTGTTGTGGCACATTGTGTCAAAAGCTTGGTACGTACTTTAGTAGAGTAGGTTTTA
CCTGTGGGATTCAAGACAGCTTTGAGTGGTGGTTGTCAGCTACACATGGTCAATGTGCCTGTCTGGAGAAATTTTTTCTG
CATGAACTGTATATCTCCTTTCCAATCTTTGAATTGGACAAGACAGAGCAGACTTGTAATCTTGAGTCAAACCATGCTGC
TTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9878.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis