Browse Element(s) Details


Os.26881.1.A1_a_at

Description gb:AK070190.1
DB_XREF= gi:32980214
TID=Os.26881.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26881 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013118F23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023042A05, full insert sequence.
FL= gb:AK072098.1 gb:AK070190.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4020011/11Mitochondrial carrier protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g40170Os.50455.1.S1_at11/116+23907921..23912799Phospholipase D alpha 2, putative, expressed
LOC_Os06g40180Os.50104.1.S1_at11/116+23920943..23923922Phospholipase D alpha 2, putative, expressed
LOC_Os06g40190Os.9878.1.S1_at11/116+23927716..23931373Phospholipase D alpha 2, putative, expressed
LOC_Os06g40200Os.26881.1.A1_a_at11/116+23934986..23941378Mitochondrial carrier protein, expressed
LOC_Os06g40200Os.26881.1.A2_a_at11/116+23934986..23941378Mitochondrial carrier protein, expressed
LOC_Os06g40210Os.18300.1.S1_at11/116+23948822..23949683expressed protein
LOC_Os06g40220OsAffx.28020.1.S1_at10/116+23955154..23957721F-box domain containing protein
LOC_Os06g40230OsAffx.15857.1.S1_at11/116+23962771..23965178hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0006839biological_processmitochondrial transport
GO:0005743cellular_componentmitochondrial inner membrane
GO:0005215molecular_functiontransporter activity
GO:0005488molecular_functionbinding
GO:0005509molecular_functioncalcium ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26881.1.A1_a_at--851--4991Chr06:23938941..23938965 (25 bp)
GCATGAGGGTGTTTCTGGATTCTAC
LOC_Os06g40200
Os.26881.1.A1_a_at--889--3051Chr06:23938981..23939005 (25 bp)
AATCTTCTTAAAGTGGTGCCTGCAG
LOC_Os06g40200
Os.26881.1.A1_a_at--266--7291Chr06:23938996..23939020 (25 bp)
GTGCCTGCAGCAAGTATTACCTACC
LOC_Os06g40200
Os.26881.1.A1_a_at--773--3051Chr06:23939044..23939068 (25 bp)
AATCTCTCCCTTGATTGAATTACGG
LOC_Os06g40200
Os.26881.1.A1_a_at--390--5211Chr06:23939060..23939084 (25 bp)
GAATTACGGAGCTGTTTGGCAAATC
LOC_Os06g40200
Os.26881.1.A1_a_at--928--8231Chr06:23939077..23939101 (25 bp)
GGCAAATCGGCCATCATTTATTGAC
LOC_Os06g40200
Os.26881.1.A1_a_at--28--1131Chr06:23939164..23939188 (25 bp)
AGTGCAAGACGGTGCCTTCAGGACA
LOC_Os06g40200
Os.26881.1.A1_a_at--581--10751Chr06:23939193..23939217 (25 bp)
TTGAAGCTATGGTGGCATCTCTCTT
LOC_Os06g40200
Os.26881.1.A1_a_at--473--7731Chr06:23939203..23939227 (25 bp)
GGTGGCATCTCTCTTAATTTTCATT
LOC_Os06g40200
Os.26881.1.A1_a_at--630--5411Chr06:23939238..23939262 (25 bp)
GAAGCGATAACCATCAGATCATTGA
LOC_Os06g40200
Os.26881.1.A1_a_at--1053--51Chr06:23939258..23939282 (25 bp)
ATTGAGACATCTTTGCTGGCGTACT
LOC_Os06g40200
Target Sequence 
GCATGAGGGTGTTTCTGGATTCTACAAAGGAATCCTACCAAATCTTCTTAAAGTGGTGCCTGCAGCAAGTATTACCTACC
TAGTGTATGAAGCAATGAAGAAAAATCTCTCCCTTGATTGAATTACGGAGCTGTTTGGCAAATCGGCCATCATTTATTGA
CATGGCTGACTGTAGAGATAATGACGATACATGATTTTACTGGTTAAGTAGCTACTTTTTTGAAGTGCAAGACGGTGCCT
TCAGGACAGAATTTGAAGCTATGGTGGCATCTCTCTTAATTTTCATTTCCCAGAAATGAAGCGATAACCATCAGATCATT
GAGACATCTTTGCTGGCGTACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26881.1.A1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis