Browse Element(s) Details


OsAffx.28020.1.S1_at

Description tigr:9634.m03858
TID=OsAffx.28020.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4022010/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g40190Os.9878.1.S1_at11/116+23927716..23931373Phospholipase D alpha 2, putative, expressed
LOC_Os06g40200Os.26881.1.A1_a_at11/116+23934986..23941378Mitochondrial carrier protein, expressed
LOC_Os06g40200Os.26881.1.A2_a_at11/116+23934986..23941378Mitochondrial carrier protein, expressed
LOC_Os06g40210Os.18300.1.S1_at11/116+23948822..23949683expressed protein
LOC_Os06g40220OsAffx.28020.1.S1_at10/116+23955154..23957721F-box domain containing protein
LOC_Os06g40230OsAffx.15857.1.S1_at11/116+23962771..23965178hypothetical protein
LOC_Os06g40240OsAffx.20387.1.S1_x_at2/116+23967212..23975390retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g40240OsAffx.1216.1.S1_at1/116+23967212..23975390retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g40250OsAffx.27819.1.S1_x_at4/116+23976459..23979013retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g40250OsAffx.27819.1.S1_at4/116+23976459..23979013retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g40250Os.47371.1.S1_at1/116+23976459..23979013retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g40250Os.45173.1.S1_x_at1/116+23976459..23979013retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g40260OsAffx.31869.5.S1_x_at1/116+23979278..23983699retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28020.1.S1_at--800--2211Chr06:23956790..23956814 (25 bp)
ACAAGCTCGCCCTGTGGGACAGGGA
LOC_Os06g40220
OsAffx.28020.1.S1_at--464--4671Chr06:23956721..23956745 (25 bp)
GCGTGGCCATCGATCTCGAGCAGGT
LOC_Os06g40220
OsAffx.28020.1.S1_at--1021--9191Chr06:23956694..23956718 (25 bp)
TGCCATGGCCGGTCGGGAATACCAA
LOC_Os06g40220
OsAffx.28020.1.S1_at--501--1211Chr06:23956642..23956666 (25 bp)
AGTTGCCGAGGACCCCAACGTCATC
LOC_Os06g40220
OsAffx.28020.1.S1_at--185--4811Chr06:23956579..23956603 (25 bp)
GCTCGATTCGCTGCGCATCAAGAAA
LOC_Os06g40220
OsAffx.28020.1.S1_at--1022--2312Chr11:22238580..22238601 (22 bp)
AAAGTGTGCGAATTGGGCAAATCAC
NONE
OsAffx.28020.1.S1_at--920--9912Chr03:22914566..22914586 (21 bp)
TACTGCGCCGAGTCATTTCTGTCTC
NONE
OsAffx.28020.1.S1_at--637--7131NONE
GTCATTTCTGTCTCAGTCTGATTCA
NONE
OsAffx.28020.1.S1_at--532--7651Chr06:23955567..23955591 (25 bp)
GGGATCTGATTGAATGCATCGTAAT
LOC_Os06g40220
OsAffx.28020.1.S1_at--462--3571Chr06:23955509..23955529 (21 bp)
CATAGTTGGGATATTGTTCAGTTCA
LOC_Os06g40220
OsAffx.28020.1.S1_at--384--10511Chr06:23955249..23955273 (25 bp)
TTCAATTCCAATCCCACCACATTTG
LOC_Os06g40220
Target Sequence 
ACAAGCTCGCCCTGTGGGACAGGGAGGAGGACGGCTCCGCCGCCGCCGCCGCCGCCCGGTGGGTGTGGCGCGTGGCCATC
GATCTCGAGCAGGTGCTGCCATGGCCGGTCGGGAATACCAAGGGCAAGGAGCGGGCGTGCTTGGCCGCAGTTGCCGAGGA
CCCCAACGTCATCTTCGTCGGCACGGAAGAAGACGGCGTCTTCGCCGTCGAGCTCGATTCGCTGCGCATCAAGAAAGTGT
GCGAATTGGGCAAATCACAAGGCCGTTTCTTCCCCTTCGTCAGCTACTGCGCCGAGTCATTTCTGTCTCAGTCTGATTCA
GACACAATTGCCAAAGCATCAAGTGATTGTGGACAATTCGGGGATCTGATTGAATGCATCGTAATCATGATTTTAGTCTT
CCATTTTTTATATACATTTCGACATAGTTGGGATATTGTTCAGTTCAATTCCAATCCCACCACATTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28020.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis