Browse Element(s) Details


OsAffx.15857.1.S1_at

Description tigr:9634.m03859
TID=OsAffx.15857.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4023011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g40200Os.26881.1.A1_a_at11/116+23934986..23941378Mitochondrial carrier protein, expressed
LOC_Os06g40200Os.26881.1.A2_a_at11/116+23934986..23941378Mitochondrial carrier protein, expressed
LOC_Os06g40210Os.18300.1.S1_at11/116+23948822..23949683expressed protein
LOC_Os06g40220OsAffx.28020.1.S1_at10/116+23955154..23957721F-box domain containing protein
LOC_Os06g40230OsAffx.15857.1.S1_at11/116+23962771..23965178hypothetical protein
LOC_Os06g40240OsAffx.20387.1.S1_x_at2/116+23967212..23975390retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g40240OsAffx.1216.1.S1_at1/116+23967212..23975390retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g40250OsAffx.27819.1.S1_x_at4/116+23976459..23979013retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g40250OsAffx.27819.1.S1_at4/116+23976459..23979013retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g40250Os.47371.1.S1_at1/116+23976459..23979013retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g40250Os.45173.1.S1_x_at1/116+23976459..23979013retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g40260OsAffx.31869.5.S1_x_at1/116+23979278..23983699retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g40270Os.45173.1.S1_x_at1/116+23984808..23989178retrotransposon protein, putative, unclassified
LOC_Os06g40280OsAffx.7527.1.S1_x_at2/116+23989809..23992668retrotransposon protein, putative, unclassified
LOC_Os06g40280Os.25754.2.S1_x_at1/116+23989809..23992668retrotransposon protein, putative, unclassified
LOC_Os06g40280Os.53479.1.S1_x_at1/116+23989809..23992668retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15857.1.S1_at--995--2951Chr06:23964349..23964373 (25 bp)
AAGGCCATCGCATGGTCAGCTGCAG
LOC_Os06g40230
OsAffx.15857.1.S1_at--897--4991Chr06:23964438..23964462 (25 bp)
GCAGGAAATAATCGGCACGTTCAAG
LOC_Os06g40230
OsAffx.15857.1.S1_at--682--10711Chr06:23964476..23964500 (25 bp)
TTGCTGATTCCGATGAGGTGCCGAT
LOC_Os06g40230
OsAffx.15857.1.S1_at--698--5091Chr06:23964521..23964545 (25 bp)
GCACGCTGCTGAGGTACCATTGGTA
LOC_Os06g40230
OsAffx.15857.1.S1_at--1026--4311Chr06:23964537..23964561 (25 bp)
CCATTGGTACCTTTGGCAGTGCTAC
LOC_Os06g40230
OsAffx.15857.1.S1_at--633--2151Chr06:23964614..23964638 (25 bp)
ACAGCTGCATCAGTTTCGCTTGCGG
LOC_Os06g40230
OsAffx.15857.1.S1_at--938--3711Chr06:23964663..23964687 (25 bp)
CTACCTCAACATTTTCGGCATCAAG
LOC_Os06g40230
OsAffx.15857.1.S1_at--270--4371Chr06:23964952..23964973 (22 bp)
CCAAGGATTTGGTCACAGTCGCGAT
LOC_Os06g40230
OsAffx.15857.1.S1_at--267--1151Chr06:23964965..23964989 (25 bp)
AGTCGCGATGTATGCTTCCCAGGGT
LOC_Os06g40230
OsAffx.15857.1.S1_at--393--7491Chr06:23965002..23965026 (25 bp)
GTGGGTAAACACGAGAAGCATCTTC
LOC_Os06g40230
OsAffx.15857.1.S1_at--1023--7991Chr06:23965028..23965052 (25 bp)
GGATGTTTTCAGGATGAGGCTCATT
LOC_Os06g40230
Target Sequence 
AAGGCCATCGCATGGTCAGCTGCAGAGGCGCTGGACCTCCTGGAGCAGACTCCGCCGCCATCGGCCGGGAGCGCCGCAAG
CCAGGACGTGCAGGAAATAATCGGCACGTTCAAGAACCTCAAGGAGCTTGCTGATTCCGATGAGGTGCCGATGGAGCCCC
TGGCGGCGACGTGCACGCTGCTGAGGTACCATTGGTACCTTTGGCAGTGCTACCACGGCGACCCAGTCACAAGGGGATTC
CCGGACGGGCTCCTCAGTTTCCTGCACAGCTGCATCAGTTTCGCTTGCGGCCCCGATGGCTACGCGCTGCCATACTACCT
CAACATTTTCGGCATCAAGGCCGACAAGCTCCCCAAGGAGGCGTGGGCCAAGGATTTGGTCACAGTCGCGATGTATGCTT
CCCAGGGTACCCGCCTCGTCGTGGGTAAACACGAGAAGCATCTTCTGGATGTTTTCAGGATGAGGCTCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15857.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis