Browse Element(s) Details


Os.18300.1.S1_at

Description gb:AK069255.1
DB_XREF= gi:32979279
TID=Os.18300.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.18300 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023016C19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023016C19, full insert sequence.
FL= gb:AK069255.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4021011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g40180Os.50104.1.S1_at11/116+23920943..23923922Phospholipase D alpha 2, putative, expressed
LOC_Os06g40190Os.9878.1.S1_at11/116+23927716..23931373Phospholipase D alpha 2, putative, expressed
LOC_Os06g40200Os.26881.1.A1_a_at11/116+23934986..23941378Mitochondrial carrier protein, expressed
LOC_Os06g40200Os.26881.1.A2_a_at11/116+23934986..23941378Mitochondrial carrier protein, expressed
LOC_Os06g40210Os.18300.1.S1_at11/116+23948822..23949683expressed protein
LOC_Os06g40220OsAffx.28020.1.S1_at10/116+23955154..23957721F-box domain containing protein
LOC_Os06g40230OsAffx.15857.1.S1_at11/116+23962771..23965178hypothetical protein
LOC_Os06g40240OsAffx.20387.1.S1_x_at2/116+23967212..23975390retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g40240OsAffx.1216.1.S1_at1/116+23967212..23975390retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18300.1.S1_at--508--2211Chr06:23949285..23949309 (25 bp)
ACAACGACAGCAATGCGTCGTCCCG
LOC_Os06g40210
Os.18300.1.S1_at--748--9091Chr06:23949431..23949455 (25 bp)
TGCTCCTACTAGCTCCAGCTAATTA
LOC_Os06g40210
Os.18300.1.S1_at--32--4791Chr06:23949442..23949466 (25 bp)
GCTCCAGCTAATTAATCTGCCATTA
LOC_Os06g40210
Os.18300.1.S1_at--455--9751Chr06:23949454..23949478 (25 bp)
TAATCTGCCATTAGTCCCTTAATCC
LOC_Os06g40210
Os.18300.1.S1_at--174--9291Chr06:23949468..23949492 (25 bp)
TCCCTTAATCCGGAACTTGTTGCTT
LOC_Os06g40210
Os.18300.1.S1_at--687--6851Chr06:23949495..23949519 (25 bp)
GTTTGCTCCCTTGCTGATCGCTAAT
LOC_Os06g40210
Os.18300.1.S1_at--285--4531Chr06:23949521..23949545 (25 bp)
GCCGCCGCTAATCATCGGGAAGTTT
LOC_Os06g40210
Os.18300.1.S1_at--62--10811Chr06:23949545..23949569 (25 bp)
TTGTAATTAGCGTGCATCCCGATGC
LOC_Os06g40210
Os.18300.1.S1_at--49--9071Chr06:23949557..23949581 (25 bp)
TGCATCCCGATGCACGAGCGAGCGA
LOC_Os06g40210
Os.18300.1.S1_at--1148--391Chr06:23949585..23949609 (25 bp)
ATCAGCAGCAGTGCAGGTGATTGTA
LOC_Os06g40210
Os.18300.1.S1_at--689--7411Chr06:23949601..23949625 (25 bp)
GTGATTGTAGCTGTACTTGTTGTAC
LOC_Os06g40210
Target Sequence 
ACAACGACAGCAATGCGTCGTCCCGCCCGGCGGCGGCCGAGCCGTCGTGCAGGAACGCGGCGGCGACGGCGGCGACGGCG
ATGCCGGCGAACCGGGAGGCGCTGTACCGCGNNNNNNNNNNNNNNNNNNNCATGCTCAGGGTCGCCTGCTCCTACTAGCT
CCAGCTAATTAATCTGCCATTAGTCCCTTAATCCGGAACTTGTTGCTTCTGTTTGCTCCCTTGCTGATCGCTAATCGCCG
CCGCTAATCATCGGGAAGTTTTGTAATTAGCGTGCATCCCGATGCACGAGCGAGCGAGCGATCAGCAGCAGTGCAGGTGA
TTGTAGCTGTACTTGTTGTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18300.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis