Browse Element(s) Details


Os.9995.1.S1_at

Description gb:AK063885.1
DB_XREF= gi:32973903
TID=Os.9995.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.9995 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-122-F12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-122-F12, full insert sequence.
FL= gb:AK063885.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1687410/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g16850OsAffx.12886.1.S1_at11/113+9338517..9339986Dof domain, zinc finger family protein, expressed
LOC_Os03g16860Os.11029.1.S1_at11/113+9349211..9352126Heat shock cognate 70 kDa protein, putative, expressed
LOC_Os03g16870Os.16498.1.S1_at8/113+9352280..9354845expressed protein
LOC_Os03g16874Os.9995.1.S1_at10/113+9355035..9356774expressed protein
LOC_Os03g16880Os.54647.1.S1_at11/113+9356944..9361643Heat shock cognate 70 kDa protein, putative, expressed
LOC_Os03g16880Os.52782.1.S1_at1/113+9356944..9361643Heat shock cognate 70 kDa protein, putative, expressed
LOC_Os03g16890Os.8831.1.S1_at11/113+9361976..9366471glycosyltransferase family 14 protein, putative, expressed
LOC_Os03g16890Os.27502.1.S1_s_at1/113+9361976..9366471glycosyltransferase family 14 protein, putative, expressed
LOC_Os03g16900Os.6346.1.S1_at11/113+9371400..9374798Rab GDP dissociation inhibitor alpha, putative, expressed
LOC_Os03g16910Os.27079.1.A1_at11/113+9381693..9384605SLT1 protein, putative, expressed
LOC_Os03g16910OsAffx.2532.1.S1_at1/113+9381693..9384605SLT1 protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9995.1.S1_at--899--4251NONE
CCGGCTATCTCGAGGTTTAGTGCAA
NONE
Os.9995.1.S1_at--123--8631Chr03:9356265..9356289 (25 bp)
TGGTGTCACGAAGCCTTGCATGATC
LOC_Os03g16874
Os.9995.1.S1_at--592--6391Chr03:9356286..9356310 (25 bp)
GATCGAGATGGTTTCCTTCCTCAAT
LOC_Os03g16874
Os.9995.1.S1_at--152--3171Chr03:9356308..9356332 (25 bp)
AATTGCCTGGCCTTGAACAAACAGA
LOC_Os03g16874
Os.9995.1.S1_at--139--4611Chr03:9356531..9356555 (25 bp)
GCGACTTGCACGAGACAAGGGCATT
LOC_Os03g16874
Os.9995.1.S1_at--441--8011Chr03:9356612..9356636 (25 bp)
GGAGTCGTAATGCAATGGCCTATTT
LOC_Os03g16874
Os.9995.1.S1_at--523--10151Chr03:9356650..9356674 (25 bp)
TATCTCAGACTAGGCATTTCAACAC
LOC_Os03g16874
Os.9995.1.S1_at--1087--9251Chr03:9356691..9356715 (25 bp)
TCCTCTGAACTTCTTTACACTATAA
LOC_Os03g16874
Os.9995.1.S1_at--5--9831Chr03:9356713..9356737 (25 bp)
TAAAACGTGGTTTGCGGCTTTTGCG
LOC_Os03g16874
Os.9995.1.S1_at--275--3951Chr03:9356727..9356751 (25 bp)
CGGCTTTTGCGGTATACTGTCATTT
LOC_Os03g16874
Os.9995.1.S1_at--445--171Chr03:9356748..9356772 (25 bp)
ATTTTGTTGGATGTCTCTGCCTGCA
LOC_Os03g16874
Target Sequence 
CCGGCTATCTCGAGGTTTAGTGCAAGAATGGGTCGGAAGGCGGGTGCGCTTTACATAAACCCAAAGAAGTTCGGTGGTGT
CACGAAGCCTTGCATGATCGAGATGGTTTCCTTCCTCAATTGCCTGGCCTTGAACAAACAGAACGATGACAAGTGTGTCC
GACAGAAGGATCTCTTGGTTGCTTGTGCTCAGGCTCAGAAAGGAAGGCCAAAGAATGCAGCAAAGACCATCAATTACCAT
CTTCAGCGACTTGCACGAGACAAGGGCATTTAGTTCCGGTAATATGGAATCTTTGTTGATCATGATGTTTGTTGCCTTGA
TGATATGGAGTCGTAATGCAATGGCCTATTTGTAATAATCTTTATATCTCAGACTAGGCATTTCAACACAATATCGATAT
TATTTTCCTCTGAACTTCTTTACACTATAAAACGTGGTTTGCGGCTTTTGCGGTATACTGTCATTTTGTTGGATGTCTCT
GCCTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9995.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis