Browse Element(s) Details


OsAffx.10018.2.S1_s_at

Description tigr:9629.m01524
TID=OsAffx.10018.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1540011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g15370NANA1+8609474..8612269retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g15380Os.43764.1.A1_at5/111+8615716..8618007hAT family dimerisation domain containing protein
LOC_Os01g15380OsAffx.24046.2.S1_x_at3/111+8615716..8618007hAT family dimerisation domain containing protein
LOC_Os01g15380OsAffx.24046.7.S1_x_at3/111+8615716..8618007hAT family dimerisation domain containing protein
LOC_Os01g15380OsAffx.24046.3.S1_x_at1/111+8615716..8618007hAT family dimerisation domain containing protein
LOC_Os01g15390Os.21017.2.S1_at11/111+8624680..8625938expressed protein
LOC_Os01g15400OsAffx.10018.2.S1_s_at11/111+8629753..8631320hypothetical protein
LOC_Os01g15400OsAffx.10018.2.S1_at9/111+8629753..8631320hypothetical protein
LOC_Os01g15400OsAffx.10018.1.S1_at3/111+8629753..8631320hypothetical protein
LOC_Os01g15410OsAffx.10018.3.A1_at11/111+8633284..8633834hypothetical protein
LOC_Os01g15420NANA1+8635850..8636305retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g15429NANA1+8643114..8643461retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g15438NANA1+8647932..8648279retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g15450OsAffx.22216.1.S1_at11/111+8652676..8654912hypothetical protein
LOC_Os01g15450OsAffx.22216.1.S1_x_at11/111+8652676..8654912hypothetical protein
LOC_Os01g15460Os.9931.1.S1_a_at11/111+8656215..8661598Zinc finger CCCH type domain containing protein ZFN-like 1, putative, expressed
LOC_Os01g15460Os.9931.3.S1_x_at11/111+8656215..8661598Zinc finger CCCH type domain containing protein ZFN-like 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10018.2.S1_s_at--189--7291Chr01:8629793..8629817 (25 bp)
GTGCCGTGATGCAGACCCTGGTCGT
LOC_Os01g15400
OsAffx.10018.2.S1_s_at--777--4191Chr01:8629808..8629832 (25 bp)
CCCTGGTCGTGGCTATTGGTCAAAG
LOC_Os01g15400
OsAffx.10018.2.S1_s_at--83--2812Chr02:17883367..17883773 (25 bp)
AAGATGCGAGGATAGCGTCCAGGAA
NONE
OsAffx.10018.2.S1_s_at--535--2091Chr01:8630102..8630126 (25 bp)
ACATGCGGCCGACCAAACTGTTGAG
LOC_Os01g15400
OsAffx.10018.2.S1_s_at--1045--2551Chr01:8630117..8630141 (25 bp)
AACTGTTGAGGCAAGTAGCTCCGAT
LOC_Os01g15400
OsAffx.10018.2.S1_s_at--846--9991Chr01:8630132..8630156 (25 bp)
TAGCTCCGATGGGAAGGCAATGCGC
LOC_Os01g15400
OsAffx.10018.2.S1_s_at--984--932Chr02:17883683..17883707 (25 bp)
AGGCAATGCGCAGCCGAACGGTGAA
NONE
OsAffx.10018.2.S1_s_at--1135--3072Chr02:17883742..17883766 (25 bp)
AATCACTGGATTAGACTGCTACTCA
NONE
OsAffx.10018.2.S1_s_at--917--2912Chr02:17883789..17883813 (25 bp)
AAGGAGGAGAAATCGCCGGCGACCT
NONE
OsAffx.10018.2.S1_s_at--351--4612Chr02:17883807..17883831 (25 bp)
GCGACCTCACCAAGAAAACCGAAGA
NONE
OsAffx.10018.2.S1_s_at--388--5972Chr02:17883869..17883893 (25 bp)
GAGAAGAGACTTCACCAAGCATCCT
NONE
Target Sequence 
GTGCCGTGATGCAGACCCTGGTCGTGGCTATTGGTCAAAGATGCGAGGATAGCGTCCAGGAAGATAAAGTGGAGGCCCTA
GGGCCTCCCGACCGAGCACATGCGGCCGACCAAACTGTTGAGGCAAGTAGCTCCGATGGGAAGGCAATGCGCAGCCGAAC
GGTGAAGGAAACCCTGGGGAAGAAGAAAAAAAAGGGAGAAATCACTGGATTAGACTGCTACTCAGCAGGAAGAAAGAGGA
AAAAGAAAGGAGGAGAAATCGCCGGCGACCTCACCAAGAAAACCGAAGAGGAGAGAATGGGGAGAGGAGGGATGTGCGCA
GCAGCCGAGAAGAGACTTCACCAAGCATCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10018.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis