Browse Element(s) Details


OsAffx.10018.3.A1_at

Description tigr:9629.m01525
TID=OsAffx.10018.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1541011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g15370NANA1+8609474..8612269retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g15380Os.43764.1.A1_at5/111+8615716..8618007hAT family dimerisation domain containing protein
LOC_Os01g15380OsAffx.24046.2.S1_x_at3/111+8615716..8618007hAT family dimerisation domain containing protein
LOC_Os01g15380OsAffx.24046.7.S1_x_at3/111+8615716..8618007hAT family dimerisation domain containing protein
LOC_Os01g15380OsAffx.24046.3.S1_x_at1/111+8615716..8618007hAT family dimerisation domain containing protein
LOC_Os01g15390Os.21017.2.S1_at11/111+8624680..8625938expressed protein
LOC_Os01g15400OsAffx.10018.2.S1_s_at11/111+8629753..8631320hypothetical protein
LOC_Os01g15400OsAffx.10018.2.S1_at9/111+8629753..8631320hypothetical protein
LOC_Os01g15400OsAffx.10018.1.S1_at3/111+8629753..8631320hypothetical protein
LOC_Os01g15410OsAffx.10018.3.A1_at11/111+8633284..8633834hypothetical protein
LOC_Os01g15420NANA1+8635850..8636305retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g15429NANA1+8643114..8643461retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g15438NANA1+8647932..8648279retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g15450OsAffx.22216.1.S1_at11/111+8652676..8654912hypothetical protein
LOC_Os01g15450OsAffx.22216.1.S1_x_at11/111+8652676..8654912hypothetical protein
LOC_Os01g15460Os.9931.1.S1_a_at11/111+8656215..8661598Zinc finger CCCH type domain containing protein ZFN-like 1, putative, expressed
LOC_Os01g15460Os.9931.3.S1_x_at11/111+8656215..8661598Zinc finger CCCH type domain containing protein ZFN-like 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10018.3.A1_at--1068--4451Chr01:8633726..8633750 (25 bp)
GCCTCCGTGCCCATGGTCTGGGTTG
LOC_Os01g15410
OsAffx.10018.3.A1_at--378--9071Chr01:8633689..8633710 (22 bp)
TGCTCATTAACGGGCGCAGCCGCGA
LOC_Os01g15410
OsAffx.10018.3.A1_at--982--4231Chr01:8633572..8633596 (25 bp)
CCGGGAAGATGTGCCGCTTCCGCAT
LOC_Os01g15410
OsAffx.10018.3.A1_at--866--7371Chr01:8633480..8633504 (25 bp)
GTGACGCCATCGAGGAGTGCGCCAT
LOC_Os01g15410
OsAffx.10018.3.A1_at--1145--8451Chr01:8633404..8633428 (25 bp)
TGGCGCCTACTTCTCATGGAGGCCA
LOC_Os01g15410
OsAffx.10018.3.A1_at--1038--4451Chr01:8633400..8633424 (25 bp)
GCCTACTTCTCATGGAGGCCAGCAA
LOC_Os01g15410
OsAffx.10018.3.A1_at--824--871Chr01:8633385..8633409 (25 bp)
AGGCCAGCAAGGTGCACGCTCGACG
LOC_Os01g15410
OsAffx.10018.3.A1_at--713--4511Chr01:8633358..8633382 (25 bp)
GCCGACGTAGGGTTCACCTATGACA
LOC_Os01g15410
OsAffx.10018.3.A1_at--39--10091Chr01:8633351..8633375 (25 bp)
TAGGGTTCACCTATGACAGCGACAT
LOC_Os01g15410
OsAffx.10018.3.A1_at--700--7891Chr01:8633348..8633372 (25 bp)
GGTTCACCTATGACAGCGACATGAG
LOC_Os01g15410
OsAffx.10018.3.A1_at--403--10131Chr01:8633340..8633364 (25 bp)
TATGACAGCGACATGAGGAGGACAT
LOC_Os01g15410
Target Sequence 
GCCTCCGTGCCCATGGTCTGGGTTGGCGAGCCGCAGTCGCTGCTCATTAACGGGCGCAGCCGCGACGGTGGCGGCGTCGC
GCAACATGGCGCACCCGGACTGCGCGCCGGCGGTGTTCGCCGTGGTGCCCGGGAAGATGTGCCGCTTCCGCATCGCCAGC
GTCACCTCCCTCTTCGTGGTCCGTTCGCGCCCGTCGGGCTCATCGACATGTTCAACGCCGGTGACGCCATCGAGGAGTGC
GCCATCGACGCCACCGCAGCTGTCGTGCCGCCCAGGGTGCGCGGTTGCGGCCGTTTTGGCGCCTACTTCTCATGGAGGCC
AGCAAGGTGCACGCTCGACGGCGCCGACGTAGGGTTCACCTATGACAGCGACATGAGGAGGACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10018.3.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis