Browse Element(s) Details


OsAffx.10091.1.S1_at

Description gb:NM_187283.1
DB_XREF= gi:34901651
GEN=P0640E12.20
TID=OsAffx.10091.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0640E12.20 (P0640E12.20), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2948011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g144801/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g29450Os.11483.1.S1_at11/117+17275926..17281914expressed protein
LOC_Os07g29450Os.11483.2.S1_at11/117+17275926..17281914expressed protein
LOC_Os07g29460NANA7+17299579..17303314retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g29470Os.45957.4.S1_x_at6/117+17303576..17304803retrotransposon protein, putative, unclassified
LOC_Os07g29480OsAffx.10091.1.S1_at11/117+17305202..17306560transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g29490Os.46012.3.S1_x_at11/117+17313852..17314870retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g29490Os.46012.2.S1_x_at8/117+17313852..17314870retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g29490Os.46012.3.S1_at8/117+17313852..17314870retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g29490Os.27088.1.A1_x_at4/117+17313852..17314870retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g29500Os.39431.1.S1_x_at11/117+17316285..17320113retrotransposon, putative, centromere-specific
LOC_Os07g29500Os.39431.1.S1_at11/117+17316285..17320113retrotransposon, putative, centromere-specific
LOC_Os07g29500OsAffx.25367.1.S1_at1/117+17316285..17320113retrotransposon, putative, centromere-specific
LOC_Os07g29510NANA7+17322638..17323463hypothetical protein
LOC_Os07g29520Os.49985.1.S1_at1/117+17328358..17332727retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10091.1.S1_at--26--8691Chr07:17305688..17305712 (25 bp)
TGTGATGATGCACCCACGTGATGGT
LOC_Os07g29480
OsAffx.10091.1.S1_at--720--2291Chr07:17305610..17305634 (25 bp)
AAATGTCCGGCTTGGTCTAGCTATA
LOC_Os07g29480
OsAffx.10091.1.S1_at--340--131Chr07:17305580..17305604 (25 bp)
ATTCACACCTTTCAACATGACTGCT
LOC_Os07g29480
OsAffx.10091.1.S1_at--32--9271Chr07:17305546..17305570 (25 bp)
TCCTGTTGGCCTGTCTTTATAGTAC
LOC_Os07g29480
OsAffx.10091.1.S1_at--260--471Chr07:17305515..17305539 (25 bp)
ATCTCCCACCAGACATTTGCATGAA
LOC_Os07g29480
OsAffx.10091.1.S1_at--501--2512Chr09:8560090..8560114 (25 bp)
AACATAATGCTTGCCCTTGTTATCC
LOC_Os09g14480
OsAffx.10091.1.S1_at--939--5471Chr07:17305436..17305460 (25 bp)
GAACTTGAGCACACTATTGGAACCT
LOC_Os07g29480
OsAffx.10091.1.S1_at--1094--7051Chr07:17305378..17305402 (25 bp)
GTAACCACATGGGATGCTTCGAAGA
LOC_Os07g29480
OsAffx.10091.1.S1_at--976--5931Chr07:17305335..17305359 (25 bp)
GAGCAGCATATCTTTGGTCGATCCA
LOC_Os07g29480
OsAffx.10091.1.S1_at--1010--3491Chr07:17305312..17305336 (25 bp)
CATGGCTTTCGTGCTTATGGTGATT
LOC_Os07g29480
OsAffx.10091.1.S1_at--617--811Chr07:17305269..17305293 (25 bp)
ATGGTAACTTAGCATGCCCAACATG
LOC_Os07g29480
Target Sequence 
TGTGATGATGCACCCACGTGATGGTGAAGCATGGATTCAATTTGATGTAGATTTTTCTACTTTTGCACAAGATCCAAGAA
ATGTCCGGCTTGGTCTAGCTATAGATGGATTCACACCTTTCAACATGACTGCTGCGTCATACTCCTGTTGGCCTGTCTTT
ATAGTACCATACAATCTCCCACCAGACATTTGCATGAAACCAGAGAACATAATGCTTGCCCTTGTTATCCCTGGTCCTCA
ACATCCTGGAAAGAACTTGAGCACACTATTGGAACCTTTGGTGGATGAGTTACTTCAGATATGGGATGATGTAACCACAT
GGGATGCTTCGAAGAAGGAAAACTTGACTATGAGAGCAGCATATCTTTGGTCGATCCATGGCTTTCGTGCTTATGGTGAT
TTTGCAGGTTGGAGCACCAATGGTAACTTAGCATGCCCAACATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10091.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis