Browse Element(s) Details


OsAffx.10108.1.S1_at

Description gb:NM_187212.1
DB_XREF= gi:34901509
GEN=P0473C09.10
TID=OsAffx.10108.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~predicted by GlimmerM etc. (P0473C09.10), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2812011/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g28090Os.8265.1.S1_at11/117+16373365..16385752ABC transporter family protein, expressed
LOC_Os07g28100NANA7+16392737..16393174hypothetical protein
LOC_Os07g28110OsAffx.22339.1.S1_at11/117+16394491..16396005Cytochrome P450 51, putative
LOC_Os07g28120OsAffx.1403.1.S1_at11/117+16397477..16401135retrotransposon protein, putative, unclassified
LOC_Os07g28120OsAffx.10108.1.S1_at11/117+16397477..16401135retrotransposon protein, putative, unclassified
LOC_Os07g28130Os.35344.18.S1_x_at10/117+16418179..16424077transposon protein, putative, Mutator sub-class
LOC_Os07g28130Os.35344.3.S1_x_at8/117+16418179..16424077transposon protein, putative, Mutator sub-class
LOC_Os07g28130OsAffx.22940.5.S1_x_at2/117+16418179..16424077transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10108.1.S1_at--650--5551Chr07:16397731..16397755 (25 bp)
GAAACGCCATTCAAGATCGTCTACT
LOC_Os07g28120
OsAffx.10108.1.S1_at--1072--491Chr07:16397716..16397740 (25 bp)
ATCGTCTACTATCGTGATCCGCCGA
LOC_Os07g28120
OsAffx.10108.1.S1_at--653--571Chr07:16397689..16397713 (25 bp)
ATCCTTTCGTACGAGGCCGTGGACA
LOC_Os07g28120
OsAffx.10108.1.S1_at--208--7731Chr07:16397651..16397675 (25 bp)
GGTGGCATACAGCAAGGCTGCACAT
LOC_Os07g28120
OsAffx.10108.1.S1_at--251--1491Chr07:16397641..16397665 (25 bp)
AGCAAGGCTGCACATGATGAACTCC
LOC_Os07g28120
OsAffx.10108.1.S1_at--1--5771Chr07:16397611..16397635 (25 bp)
GACGTCCGCAGCAAACTTGAACATG
LOC_Os07g28120
OsAffx.10108.1.S1_at--484--5491Chr07:16397593..16397617 (25 bp)
GAACATGCACATATGGTGGCCAAGA
LOC_Os07g28120
OsAffx.10108.1.S1_at--842--10091Chr07:16397582..16397606 (25 bp)
TATGGTGGCCAAGAAGGCATACGAT
LOC_Os07g28120
OsAffx.10108.1.S1_at--1068--2931Chr07:16397569..16397593 (25 bp)
AAGGCATACGATCGTGGCCATCGGC
LOC_Os07g28120
OsAffx.10108.1.S1_at--211--491Chr07:16397550..16397574 (25 bp)
ATCGGCCCCTGTGCCATTTTCTGTT
LOC_Os07g28120
OsAffx.10108.1.S1_at--680--10371Chr07:16397534..16397558 (25 bp)
TTTTCTGTTGGTGATTGGGCATGGC
LOC_Os07g28120
Target Sequence 
GAAACGCCATTCAAGATCGTCTACTATCGTGATCCGCCGACCATCCTTTCGTACGAGGCCGTGGACACCAAGGTGGCTGT
GGTGGCATACAGCAAGGCTGCACATGATGAACTCCTGGCCGACGTCCGCAGCAAACTTGAACATGCACATATGGTGGCCA
AGAAGGCATACGATCGTGGCCATCGGCCCCTGTGCCATTTTCTGTTGGTGATTGGGCATGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10108.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis