Browse Element(s) Details


OsAffx.10384.2.S1_s_at

Description gb:NM_185310.1
DB_XREF= gi:34897705
GEN=OSJNBb0091I19.6
TID=OsAffx.10384.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OSJNBb0091I19.6 (OSJNBb0091I19.6), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1863011/11hypothetical protein
LOC_Os07g186102/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g18570OsAffx.16326.1.S1_at11/117+10982462..10983829hypothetical protein
LOC_Os07g18580OsAffx.22620.1.S1_x_at11/117+10987060..10987837hypothetical protein
LOC_Os07g18580OsAffx.22620.1.S1_at10/117+10987060..10987837hypothetical protein
LOC_Os07g18590Os.30587.1.S1_at4/117+10989921..10990746hypothetical protein
LOC_Os07g18600OsAffx.28510.1.S1_at11/117+10991424..10992579F-box domain containing protein
LOC_Os07g18610OsAffx.10384.1.S1_at11/117+10996348..10998022F-box domain containing protein, expressed
LOC_Os07g18610OsAffx.10384.2.S1_s_at2/117+10996348..10998022F-box domain containing protein, expressed
LOC_Os07g18610OsAffx.10384.2.S1_at1/117+10996348..10998022F-box domain containing protein, expressed
LOC_Os07g18620NANA7+10999854..11003540retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g18630OsAffx.10384.2.S1_at11/117+11005588..11006335hypothetical protein
LOC_Os07g18630OsAffx.10384.2.S1_s_at11/117+11005588..11006335hypothetical protein
LOC_Os07g18630OsAffx.10384.1.S1_at1/117+11005588..11006335hypothetical protein
LOC_Os07g18640NANA7+11019166..11020719retrotransposon, putative, centromere-specific
LOC_Os07g18660OsAffx.21039.2.S1_at11/117+11024900..11029628hypothetical protein
LOC_Os07g18660OsAffx.28511.1.S1_at1/117+11024900..11029628hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10384.2.S1_s_at--682--9031Chr07:11005645..11005669 (25 bp)
TGCGGGTTCCCCAAGAAAGGCCATG
LOC_Os07g18630
OsAffx.10384.2.S1_s_at--1146--1411Chr07:11005658..11005682 (25 bp)
AGAAAGGCCATGTCTGTGTCGCCGC
LOC_Os07g18630
OsAffx.10384.2.S1_s_at--415--9131Chr07:11005689..11005713 (25 bp)
TGCTGGTGGTGTTCTGCCGCTGCTT
LOC_Os07g18630
OsAffx.10384.2.S1_s_at--343--4771Chr07:11005707..11005731 (25 bp)
GCTGCTTCCCTTGCCAGAGGAGGAG
LOC_Os07g18630
OsAffx.10384.2.S1_s_at--818--2791Chr07:11005735..11005759 (25 bp)
AAGATCGACGGAATCAGCGCTCTAC
LOC_Os07g18630
OsAffx.10384.2.S1_s_at--419--10591Chr07:11005790..11005814 (25 bp)
TTCTCCCGACCATTGGTGGTGCCAA
LOC_Os07g18630
OsAffx.10384.2.S1_s_at--247--632Chr07:11006020..11006044 (25 bp)
ATGCTGCTGCTATTGAATGTCTCGA
LOC_Os07g18630
OsAffx.10384.2.S1_s_at--425--8711Chr07:11006037..11006061 (25 bp)
TGTCTCGATCTCCATCTCAAGGAAA
LOC_Os07g18630
OsAffx.10384.2.S1_s_at--93--8171Chr07:11006216..11006240 (25 bp)
GGAAAAGCTTCTCCAAATGCTCGAT
LOC_Os07g18630
OsAffx.10384.2.S1_s_at--723--5211Chr07:11006243..11006267 (25 bp)
GAATTTTCACGCGACGACTATTTTA
LOC_Os07g18630
OsAffx.10384.2.S1_s_at--546--10472Chr07:11006278..11006302 (25 bp)
TTACAACCATTCACAACGCAGTCAT
LOC_Os07g18630
Target Sequence 
TGCGGGTTCCCCAAGAAAGGCCATGTCTGTGTCGCCGCCGCTGCTGCTGGTGGTGTTCTGCCGCTGCTTCCCTTGCCAGA
GGAGGAGGAGAAGATCGACGGAATCAGCGCTCTACCCGACGATGTCCTCCACACAATCATCTCCCTTCTCCCGACCATTG
GTGGTGCCAAGACGCAAGTCATATCCTCAGATCTGGCAGAAGGTCTTTTTGTTCCAGATATCCATAATGGTCTTGTAGAT
GATGCTGCTGCTATTGAATGTCTCGATCTCCATCTCAAGGAAATAGTGGTGAGAAACTACAGAGGCCAGAAATCACATGC
TGCTTTTGCAAAATTCTTTATTCTAAATGCCAGCGTGCTCAAGGCTACTTCGCTTGAGGGAAAAGCTTCTCCAAATGCTC
GATTTGAATTTTCACGCGACGACTATTTTATGGATTATTATTACAACCATTCACAACGCAGTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10384.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis