Browse Element(s) Details


OsAffx.10384.1.S1_at

Description gb:NM_185308.1
DB_XREF= gi:34897701
GEN=OSJNBb0091I19.8
TID=OsAffx.10384.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative ribosomal RNA apurinic site specific lyase (OSJNBb0091I19.8), mRNA.
PROD=putative ribosomal RNA apurinic site specificlyase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1861011/11F-box domain containing protein, expressed
LOC_Os07g186301/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g18550OsAffx.8792.1.S1_at11/117+10973694..10974107hypothetical protein
LOC_Os07g18560Os.30976.1.S1_at11/117+10977428..10979183F-box domain containing protein, expressed
LOC_Os07g18570OsAffx.16326.1.S1_at11/117+10982462..10983829hypothetical protein
LOC_Os07g18580OsAffx.22620.1.S1_x_at11/117+10987060..10987837hypothetical protein
LOC_Os07g18580OsAffx.22620.1.S1_at10/117+10987060..10987837hypothetical protein
LOC_Os07g18590Os.30587.1.S1_at4/117+10989921..10990746hypothetical protein
LOC_Os07g18600OsAffx.28510.1.S1_at11/117+10991424..10992579F-box domain containing protein
LOC_Os07g18610OsAffx.10384.1.S1_at11/117+10996348..10998022F-box domain containing protein, expressed
LOC_Os07g18610OsAffx.10384.2.S1_s_at2/117+10996348..10998022F-box domain containing protein, expressed
LOC_Os07g18610OsAffx.10384.2.S1_at1/117+10996348..10998022F-box domain containing protein, expressed
LOC_Os07g18620NANA7+10999854..11003540retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g18630OsAffx.10384.2.S1_at11/117+11005588..11006335hypothetical protein
LOC_Os07g18630OsAffx.10384.2.S1_s_at11/117+11005588..11006335hypothetical protein
LOC_Os07g18630OsAffx.10384.1.S1_at1/117+11005588..11006335hypothetical protein
LOC_Os07g18640NANA7+11019166..11020719retrotransposon, putative, centromere-specific

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10384.1.S1_at--804--4451Chr07:10997214..10997238 (25 bp)
GCCTAGGGTTGTCAGTGTGTTTTCT
LOC_Os07g18610
OsAffx.10384.1.S1_at--1058--7411Chr07:10997230..10997254 (25 bp)
GTGTTTTCTGCACCCAAACTTGAGG
LOC_Os07g18610
OsAffx.10384.1.S1_at--737--2391Chr07:10997245..10997269 (25 bp)
AAACTTGAGGTGCTTGGCTGCCTAT
LOC_Os07g18610
OsAffx.10384.1.S1_at--234--4791Chr07:10997261..10997285 (25 bp)
GCTGCCTATCGGATGGCATCTCTGA
LOC_Os07g18610
OsAffx.10384.1.S1_at--744--10051Chr07:10997303..10997434 (25 bp)
TAGTTTGGCCGCAACAACTCAGGGT
LOC_Os07g18610
OsAffx.10384.1.S1_at--540--2171Chr07:10997423..10997447 (25 bp)
ACAACTCAGGGTCAATTCGATGGCA
LOC_Os07g18610
OsAffx.10384.1.S1_at--341--10631Chr07:10997438..10997462 (25 bp)
TTCGATGGCAATGCTGCGCACAGTA
LOC_Os07g18610
OsAffx.10384.1.S1_at--20--3111Chr07:10997490..10997514 (25 bp)
AATAGCCTGGATGCAACCGTTCATA
LOC_Os07g18610
OsAffx.10384.1.S1_at--984--5151Chr07:10997502..10997526 (25 bp)
GCAACCGTTCATATCCTCAGATGTT
LOC_Os07g18610
OsAffx.10384.1.S1_at--759--3431Chr07:10997519..10997543 (25 bp)
CAGATGTTTCCCGTGCGTGCAGAAG
LOC_Os07g18610
OsAffx.10384.1.S1_at--865--3412Chr07:11005851..11005977 (25 bp)
CAGAAGCTTCATATCACGCTGGCAG
LOC_Os07g18630
Target Sequence 
GCCTAGGGTTGTCAGTGTGTTTTCTGCACCCAAACTTGAGGTGCTTGGCTGCCTATCGGATGGCATCTCTGATGAACACT
ATGGGGTTGTAGTTTGGCCGCAACAACTCAGGGTCAATTCGATGGCAATGCTGCGCACAGTAAAGATCCTGGCATTTAGG
ATTGAGGAGAATAGCCTGGATGCAACCGTTCATATCCTCAGATGTTTCCCGTGCGTGCAGAAGCTTCATATCACGCTGGC
AG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10384.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis