Browse Element(s) Details


Os.30976.1.S1_at

Description gb:AK108035.1
DB_XREF= gi:32993244
TID=Os.30976.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.30976 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative ribosomal RNA apurinic site specific lyase (OSJNBb0091I19.15), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-137-C04, full insert sequence.
FL= gb:AK108035.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1856011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g18510Os.34012.1.S1_at11/117+10952398..10954190F-box domain containing protein, expressed
LOC_Os07g18520Os.26886.2.S1_s_at10/117+10957393..10960487transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g18520Os.26886.6.S1_s_at10/117+10957393..10960487transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g18520OsAffx.16467.1.S1_at3/117+10957393..10960487transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g18530Os.26886.1.S1_x_at8/117+10963093..10966437transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g18530Os.26886.3.S1_x_at6/117+10963093..10966437transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g18540OsAffx.16325.1.S1_at10/117+10968766..10971196hypothetical protein
LOC_Os07g18540Os.39431.1.S1_at3/117+10968766..10971196hypothetical protein
LOC_Os07g18540Os.39431.1.S1_x_at2/117+10968766..10971196hypothetical protein
LOC_Os07g18550OsAffx.8792.1.S1_at11/117+10973694..10974107hypothetical protein
LOC_Os07g18560Os.30976.1.S1_at11/117+10977428..10979183F-box domain containing protein, expressed
LOC_Os07g18570OsAffx.16326.1.S1_at11/117+10982462..10983829hypothetical protein
LOC_Os07g18580OsAffx.22620.1.S1_x_at11/117+10987060..10987837hypothetical protein
LOC_Os07g18580OsAffx.22620.1.S1_at10/117+10987060..10987837hypothetical protein
LOC_Os07g18590Os.30587.1.S1_at4/117+10989921..10990746hypothetical protein
LOC_Os07g18600OsAffx.28510.1.S1_at11/117+10991424..10992579F-box domain containing protein
LOC_Os07g18610OsAffx.10384.1.S1_at11/117+10996348..10998022F-box domain containing protein, expressed
LOC_Os07g18610OsAffx.10384.2.S1_s_at2/117+10996348..10998022F-box domain containing protein, expressed
LOC_Os07g18610OsAffx.10384.2.S1_at1/117+10996348..10998022F-box domain containing protein, expressed
LOC_Os07g18620NANA7+10999854..11003540retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.30976.1.S1_at--12--2631Chr07:10978123..10978147 (25 bp)
AACCTGACAACCTCGATTCGAACGG
LOC_Os07g18560
Os.30976.1.S1_at--787--6211Chr07:10977900..10978043 (25 bp)
GAGGCTGTATGTTGTATCTCGCCCA
LOC_Os07g18560
Os.30976.1.S1_at--1042--6891Chr07:10977887..10977908 (22 bp)
GTATCTCGCCCACATAAGGTTATCA
LOC_Os07g18560
Os.30976.1.S1_at--551--351Chr07:10977857..10977881 (25 bp)
ATAAGGAGCTATGACCCACTACATC
LOC_Os07g18560
Os.30976.1.S1_at--1059--2291Chr07:10977718..10977742 (25 bp)
AAATGGATTTCTGTAGCCCTAGCAA
LOC_Os07g18560
Os.30976.1.S1_at--517--6971Chr07:10977706..10977730 (25 bp)
GTAGCCCTAGCAATCGCAATCTGAA
LOC_Os07g18560
Os.30976.1.S1_at--486--2471Chr07:10977667..10977691 (25 bp)
AACACAGGCGCCTTTCATTGGAAAA
LOC_Os07g18560
Os.30976.1.S1_at--805--351Chr07:10977643..10977667 (25 bp)
ATAAGGCTTCTCAAGTTGCTCAATT
LOC_Os07g18560
Os.30976.1.S1_at--1050--7171Chr07:10977549..10977573 (25 bp)
GTCTGATCCTTTTGATTTCTCTTCA
LOC_Os07g18560
Os.30976.1.S1_at--937--10311Chr07:10977534..10977558 (25 bp)
TTTCTCTTCATGTCTATGCTCTTCA
LOC_Os07g18560
Os.30976.1.S1_at--219--9571Chr07:10977515..10977539 (25 bp)
TCTTCATGTCGATTCTTCTTCCAGT
LOC_Os07g18560
Target Sequence 
AACCTGACAACCTCGATTCGAACGGTGAAGGTTTTGGTTCTTGATTCAAATGGCCCTAATCTGGATGTAGTTGTTGACTT
CCTCAAATGCTTCCCCTGCTTGGAGAGGCTGTATGTTGTATCTCGCCCACATAAGGTTATCAAGAATATAAGGAGCTATG
ACCCACTACATCCAATAGAATGCATGGAGCTCCATCTCAGAAAAGTGGTAATAAGATATTATGAAGGCAAGAGGCCAGAT
GTTGACTTTGCCAAGTTCTTTGTTCTGAATGCAAAAGTGCTAAGAGAAATGGATTTCTGTAGCCCTAGCAATCGCAATCT
GAAATGGCAGGATAACCAACACAGGCGCCTTTCATTGGAAAATAAGGCTTCTCAAGTTGCTCAATTTACATTTAAAACTA
CCTCTAGGACTAGGAATGAGTTGACTAGGAACAGGCATACACATGAATTGTCAATGTCTGATCCTTTTGATTTCTCTTCA
TGTCTATGCTCTTCATGTCGATTCTTCTTCCAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.30976.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis