Browse Element(s) Details


Os.30587.1.S1_at

Description gb:AK108629.1
DB_XREF= gi:32993838
TID=Os.30587.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.30587 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBb0091I19.12 (OSJNBb0091I19.12), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-147-E12, full insert sequence.
FL= gb:AK108629.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g185904/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g18530Os.26886.1.S1_x_at8/117+10963093..10966437transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g18530Os.26886.3.S1_x_at6/117+10963093..10966437transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g18540OsAffx.16325.1.S1_at10/117+10968766..10971196hypothetical protein
LOC_Os07g18540Os.39431.1.S1_at3/117+10968766..10971196hypothetical protein
LOC_Os07g18540Os.39431.1.S1_x_at2/117+10968766..10971196hypothetical protein
LOC_Os07g18550OsAffx.8792.1.S1_at11/117+10973694..10974107hypothetical protein
LOC_Os07g18560Os.30976.1.S1_at11/117+10977428..10979183F-box domain containing protein, expressed
LOC_Os07g18570OsAffx.16326.1.S1_at11/117+10982462..10983829hypothetical protein
LOC_Os07g18580OsAffx.22620.1.S1_x_at11/117+10987060..10987837hypothetical protein
LOC_Os07g18580OsAffx.22620.1.S1_at10/117+10987060..10987837hypothetical protein
LOC_Os07g18590Os.30587.1.S1_at4/117+10989921..10990746hypothetical protein
LOC_Os07g18600OsAffx.28510.1.S1_at11/117+10991424..10992579F-box domain containing protein
LOC_Os07g18610OsAffx.10384.1.S1_at11/117+10996348..10998022F-box domain containing protein, expressed
LOC_Os07g18610OsAffx.10384.2.S1_s_at2/117+10996348..10998022F-box domain containing protein, expressed
LOC_Os07g18610OsAffx.10384.2.S1_at1/117+10996348..10998022F-box domain containing protein, expressed
LOC_Os07g18620NANA7+10999854..11003540retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g18630OsAffx.10384.2.S1_at11/117+11005588..11006335hypothetical protein
LOC_Os07g18630OsAffx.10384.2.S1_s_at11/117+11005588..11006335hypothetical protein
LOC_Os07g18630OsAffx.10384.1.S1_at1/117+11005588..11006335hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.30587.1.S1_at--390--8351Chr05:1888501..1888525 (25 bp)
GGCGGTGGTGACTCTCGAAGACAAC
NONE
Os.30587.1.S1_at--55--5371Chr05:1888517..1888541 (25 bp)
GAAGACAACGGATCCACCAATCTCG
NONE
Os.30587.1.S1_at--671--4532Chr07:10990444..10990467 (24 bp)
GCCCCAAGCGACGACTGTGACAGGT
LOC_Os07g18590
Os.30587.1.S1_at--1013--8794Chr07:10990513..10990537 (25 bp)
TGTTCTGTCAGTATTCTTTTTCTTG
LOC_Os07g18590
Os.30587.1.S1_at--620--113Chr07:10990525..10990549 (25 bp)
ATTCTTTTTCTTGTGCTCGAGCCAA
LOC_Os07g18590
Os.30587.1.S1_at--443--9373Chr07:10990541..10990565 (25 bp)
TCGAGCCAACCTTGTGTTGTTTCTT
LOC_Os07g18590
Os.30587.1.S1_at--977--6851Chr05:1888755..1888779 (25 bp)
GTTTGGTTGGTTGCAGTAGCCTCAG
NONE
Os.30587.1.S1_at--778--10791Chr05:1888814..1888838 (25 bp)
TTGTTCAAGTTCAGGAATTCACGGG
NONE
Os.30587.1.S1_at--349--3513Chr07:10990799..10990823 (25 bp)
CATGTTCCTCCTGTAATTTAGCAAG
NONE
Os.30587.1.S1_at--964--6153Chr07:10990841..10990865 (25 bp)
GAGGATTTGATCCTACTGATTATCA
NONE
Os.30587.1.S1_at--670--8833Chr07:10990857..10990881 (25 bp)
TGATTATCAAGCAATTCCTCTCTCC
NONE
Target Sequence 
GGCGGTGGTGACTCTCGAAGACAACGGATCCACCAATCTCGGCCCCAAGCGACGACTGTGACAGGTGGCGGCGGCAGCTA
TTGGTGTTGCAAGCGGTGGGCGGCGGTGCTTGTTCTGTCAGTATTCTTTTTCTTGTGCTCGAGCCAACCTTGTGTTGTTT
CTTGGTTCAGAGATGGGTTGGTGGCTTGGCTGCTCATGAATTGTTTCTTCTTGGTTTGTTGGTGGCTTGGCTGCTCATGA
ATTGTTTCTTCTTGGTTTGGTTGGTTGCAGTAGCCTCAGGGTGAGGAGTATGGAGGTTCTTGAATTGTTTTTTTTGTTCA
AGTTCAGGAATTCACGGGGGAGGAATTCATGGGCATGTTCCTCCTGTAATTTAGCAAGATGGTTGAGGAAGTGGTGAGGA
TTTGATCCTACTGATTATCAAGCAATTCCTCTCTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.30587.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis