Browse Element(s) Details


OsAffx.8792.1.S1_at

Description tigr:9635.m01871
TID=OsAffx.8792.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1855011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g18510Os.34012.1.S1_at11/117+10952398..10954190F-box domain containing protein, expressed
LOC_Os07g18520Os.26886.2.S1_s_at10/117+10957393..10960487transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g18520Os.26886.6.S1_s_at10/117+10957393..10960487transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g18520OsAffx.16467.1.S1_at3/117+10957393..10960487transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g18530Os.26886.1.S1_x_at8/117+10963093..10966437transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g18530Os.26886.3.S1_x_at6/117+10963093..10966437transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g18540OsAffx.16325.1.S1_at10/117+10968766..10971196hypothetical protein
LOC_Os07g18540Os.39431.1.S1_at3/117+10968766..10971196hypothetical protein
LOC_Os07g18540Os.39431.1.S1_x_at2/117+10968766..10971196hypothetical protein
LOC_Os07g18550OsAffx.8792.1.S1_at11/117+10973694..10974107hypothetical protein
LOC_Os07g18560Os.30976.1.S1_at11/117+10977428..10979183F-box domain containing protein, expressed
LOC_Os07g18570OsAffx.16326.1.S1_at11/117+10982462..10983829hypothetical protein
LOC_Os07g18580OsAffx.22620.1.S1_x_at11/117+10987060..10987837hypothetical protein
LOC_Os07g18580OsAffx.22620.1.S1_at10/117+10987060..10987837hypothetical protein
LOC_Os07g18590Os.30587.1.S1_at4/117+10989921..10990746hypothetical protein
LOC_Os07g18600OsAffx.28510.1.S1_at11/117+10991424..10992579F-box domain containing protein
LOC_Os07g18610OsAffx.10384.1.S1_at11/117+10996348..10998022F-box domain containing protein, expressed
LOC_Os07g18610OsAffx.10384.2.S1_s_at2/117+10996348..10998022F-box domain containing protein, expressed
LOC_Os07g18610OsAffx.10384.2.S1_at1/117+10996348..10998022F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8792.1.S1_at--302--6211Chr07:10974051..10974075 (25 bp)
GAGGCTTTCAACACTCACAACGTCG
LOC_Os07g18550
OsAffx.8792.1.S1_at--1074--8291Chr07:10974049..10974073 (25 bp)
GGCTTTCAACACTCACAACGTCGTG
LOC_Os07g18550
OsAffx.8792.1.S1_at--347--10291Chr07:10974046..10974070 (25 bp)
TTTCAACACTCACAACGTCGTGCCT
LOC_Os07g18550
OsAffx.8792.1.S1_at--54--2191Chr07:10974041..10974065 (25 bp)
ACACTCACAACGTCGTGCCTGCGAT
LOC_Os07g18550
OsAffx.8792.1.S1_at--1118--2571Chr07:10974033..10974057 (25 bp)
AACGTCGTGCCTGCGATCGGCTAGG
LOC_Os07g18550
OsAffx.8792.1.S1_at--410--9111Chr07:10974022..10974046 (25 bp)
TGCGATCGGCTAGGGCGAAGGCTGT
LOC_Os07g18550
OsAffx.8792.1.S1_at--1119--2931Chr07:10974005..10974029 (25 bp)
AAGGCTGTGTGGAAGTTCCGGCATT
LOC_Os07g18550
OsAffx.8792.1.S1_at--280--3891Chr07:10974001..10974025 (25 bp)
CTGTGTGGAAGTTCCGGCATTGGCC
LOC_Os07g18550
OsAffx.8792.1.S1_at--1009--5331Chr07:10973994..10974018 (25 bp)
GAAGTTCCGGCATTGGCCAGCGCTA
LOC_Os07g18550
OsAffx.8792.1.S1_at--479--3611Chr07:10973984..10974008 (25 bp)
CATTGGCCAGCGCTACGCAAAGTTA
LOC_Os07g18550
OsAffx.8792.1.S1_at--543--10871Chr07:10973982..10974006 (25 bp)
TTGGCCAGCGCTACGCAAAGTTACG
LOC_Os07g18550
Target Sequence 
GAGGCTTTCAACACTCACAACGTCGTGCCTGCGATCGGCTAGGGCGAAGGCTGTGTGGAAGTTCCGGCATTGGCCAGCGC
TACGCAAAGTTACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8792.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis