Browse Element(s) Details


OsAffx.16325.1.S1_at

Description tigr:9635.m01870
TID=OsAffx.16325.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1854010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g18500Os.46012.2.S1_x_at10/117+10943695..10948410retrotransposon protein, putative, unclassified
LOC_Os07g18500Os.46012.3.S1_x_at6/117+10943695..10948410retrotransposon protein, putative, unclassified
LOC_Os07g18500Os.27088.1.A1_x_at5/117+10943695..10948410retrotransposon protein, putative, unclassified
LOC_Os07g18510Os.34012.1.S1_at11/117+10952398..10954190F-box domain containing protein, expressed
LOC_Os07g18520Os.26886.2.S1_s_at10/117+10957393..10960487transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g18520Os.26886.6.S1_s_at10/117+10957393..10960487transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g18520OsAffx.16467.1.S1_at3/117+10957393..10960487transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g18530Os.26886.1.S1_x_at8/117+10963093..10966437transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g18530Os.26886.3.S1_x_at6/117+10963093..10966437transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g18540OsAffx.16325.1.S1_at10/117+10968766..10971196hypothetical protein
LOC_Os07g18540Os.39431.1.S1_at3/117+10968766..10971196hypothetical protein
LOC_Os07g18540Os.39431.1.S1_x_at2/117+10968766..10971196hypothetical protein
LOC_Os07g18550OsAffx.8792.1.S1_at11/117+10973694..10974107hypothetical protein
LOC_Os07g18560Os.30976.1.S1_at11/117+10977428..10979183F-box domain containing protein, expressed
LOC_Os07g18570OsAffx.16326.1.S1_at11/117+10982462..10983829hypothetical protein
LOC_Os07g18580OsAffx.22620.1.S1_x_at11/117+10987060..10987837hypothetical protein
LOC_Os07g18580OsAffx.22620.1.S1_at10/117+10987060..10987837hypothetical protein
LOC_Os07g18590Os.30587.1.S1_at4/117+10989921..10990746hypothetical protein
LOC_Os07g18600OsAffx.28510.1.S1_at11/117+10991424..10992579F-box domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16325.1.S1_at--995--7071Chr07:10971064..10971088 (25 bp)
GTCAAGCTCGGTTGGTGCGATTTCC
LOC_Os07g18540
OsAffx.16325.1.S1_at--289--7251Chr07:10971050..10971074 (25 bp)
GTGCGATTTCCCCAGCGGAATGGCA
LOC_Os07g18540
OsAffx.16325.1.S1_at--109--2731Chr07:10971001..10971025 (25 bp)
AAGCAGATCACGCTGTCCGACGTCA
LOC_Os07g18540
OsAffx.16325.1.S1_at--317--3611Chr07:10970931..10970955 (25 bp)
CATTGGAGAGCCTTCTGCTAGAGGG
LOC_Os07g18540
OsAffx.16325.1.S1_at--736--2391Chr07:10970868..10970892 (25 bp)
AAACTCTCAGGAGCTTGGGCCTCTG
LOC_Os07g18540
OsAffx.16325.1.S1_at--696--8651Chr07:10970853..10970877 (25 bp)
TGGGCCTCTGTTATTCGTGGAATGC
LOC_Os07g18540
OsAffx.16325.1.S1_at--842--10691Chr07:10970783..10970807 (25 bp)
TTGCCTCCAGAGATTGCTTACACCT
LOC_Os07g18540
OsAffx.16325.1.S1_at--1102--531Chr07:10970734..10970758 (25 bp)
ATCCGGGTGATTGCAGCGCCTAAAA
LOC_Os07g18540
OsAffx.16325.1.S1_at--675--8831Chr07:10970454..10970478 (25 bp)
TGATTTCCTCAAATGTGTCCCATGC
LOC_Os07g18540
OsAffx.16325.1.S1_at--270--7251Chr07:10970438..10970462 (25 bp)
GTCCCATGCTTGGAGACGCTGTATA
LOC_Os07g18540
OsAffx.16325.1.S1_at--601--8771NONE
TGTATATCACTTCTCGCCCAGATAA
NONE
Target Sequence 
GTCAAGCTCGGTTGGTGCGATTTCCCCAGCGGAATGGCACCGCGGCCGCATTTCCCTCGCCTCAAGCAGATCACGCTGTC
CGACGTCAGCATCTCCGAGGACGCCATCCATGGCGTGCTCTCATGCTGCCCTGCATTGGAGAGCCTTCTGCTAGAGGGGA
AGAGCTTCGGCGTTCGTCGCCTCCGCATCGCCTCCCAAACTCTCAGGAGCTTGGGCCTCTGTTATTCGTGGAATGCACGA
GATGATGGCAGGTTGCAGGAGGTGGTCATCGTGGATGCCCCTTGCCTCCAGAGATTGCTTACACCTTATCTGAATAATGG
TCCAGCGACCATCCGGGTGATTGCAGCGCCTAAAATGGAGGCATTGGGTTGGATTTCTGATGGCATATCTGAACTCCACC
TTGGAACAACATATTTTCCGNNANCNNCNNNNNNNNNCNTNNNNNNCNNNNNNNCANNNNTNNNNGNTNNNNNTNNTNNN
TNNGATGGCCCTAATCTGGATGCAGTTGTTGATTTCCTCAAATGTGTCCCATGCTTGGAGACGCTGTATATCACTTCTCG
CCCAGATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16325.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis