Browse Element(s) Details


OsAffx.10482.2.S1_at

Description tigr:9631.m03375
TID=OsAffx.10482.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3534011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g35330NANA3+19523407..19525077retrotransposon, putative, centromere-specific
LOC_Os03g35340OsAffx.10482.1.S1_x_at11/113+19540058..19559250expressed protein
LOC_Os03g35340Os.20811.1.A1_s_at11/113+19540058..19559250expressed protein
LOC_Os03g35340Os.20811.2.S1_s_at11/113+19540058..19559250expressed protein
LOC_Os03g35340OsAffx.10482.2.S1_at11/113+19540058..19559250expressed protein
LOC_Os03g35340OsAffx.11.1.A1_at1/113+19540058..19559250expressed protein
LOC_Os03g35350OsAffx.10483.1.S1_at11/113+19560043..19560375hypothetical protein
LOC_Os03g35360OsAffx.13187.1.S1_at11/113+19567560..19568039hypothetical protein
LOC_Os03g35370NANA3+19569548..19571275hypothetical protein
LOC_Os03g35380Os.54287.1.S1_at4/113+19571790..19575296Transposable element protein, putative, Transposase_28
LOC_Os03g35390Os.1709.1.S1_x_at9/113+19575896..19581808retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g35390Os.31497.2.S1_x_at1/113+19575896..19581808retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10482.2.S1_at--1084--10851Chr03:19540203..19540227 (25 bp)
TTGGTTCATAAGCTCATCCTACATG
LOC_Os03g35340
OsAffx.10482.2.S1_at--1063--6731Chr03:19540200..19540224 (25 bp)
GTTCATAAGCTCATCCTACATGGGC
LOC_Os03g35340
OsAffx.10482.2.S1_at--747--351Chr03:19540196..19540220 (25 bp)
ATAAGCTCATCCTACATGGGCTGTG
LOC_Os03g35340
OsAffx.10482.2.S1_at--942--2691Chr03:19540194..19540218 (25 bp)
AAGCTCATCCTACATGGGCTGTGTG
LOC_Os03g35340
OsAffx.10482.2.S1_at--307--4831Chr03:19540192..19540216 (25 bp)
GCTCATCCTACATGGGCTGTGTGTT
LOC_Os03g35340
OsAffx.10482.2.S1_at--831--9251Chr03:19540187..19540211 (25 bp)
TCCTACATGGGCTGTGTGTTGAGAA
LOC_Os03g35340
OsAffx.10482.2.S1_at--768--2111Chr03:19540183..19540207 (25 bp)
ACATGGGCTGTGTGTTGAGAATGAA
LOC_Os03g35340
OsAffx.10482.2.S1_at--203--8351Chr03:19540178..19540202 (25 bp)
GGCTGTGTGTTGAGAATGAATGCTT
LOC_Os03g35340
OsAffx.10482.2.S1_at--960--10751Chr03:19540169..19540193 (25 bp)
TTGAGAATGAATGCTTCTAACAATC
LOC_Os03g35340
OsAffx.10482.2.S1_at--44--8553Chr03:19540109..19540133 (25 bp)
TGGATAGCTGAAGACCGTACGGTAT
LOC_Os03g35340
OsAffx.10482.2.S1_at--210--5833Chr03:19540097..19540121 (25 bp)
GACCGTACGGTATGAATTGTTTTCT
LOC_Os03g35340
Target Sequence 
TTGGTTCATAAGCTCATCCTACATGGGCTGTGTGTTGAGAATGAATGCTTCTAACAATCCTTTAAAATCACGAGATGCCA
CTTTATCAGAAATTTGGATAGCTGAAGACCGTACGGTATGAATTGTTTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10482.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis