Browse Element(s) Details


OsAffx.10555.1.S1_at

Description tigr:9629.m00565
TID=OsAffx.10555.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0637011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g06310Os.6389.1.S1_at11/111+2996395..2997985expressed protein
LOC_Os01g06320Os.31652.1.S1_at11/111+3000662..3002530myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os01g06320Os.31652.2.S1_x_at10/111+3000662..3002530myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os01g06330NANA1+3007213..3008966hypothetical protein
LOC_Os01g06340Os.31008.1.S1_at11/111+3010717..3011553expressed protein
LOC_Os01g06350NANA1+3012647..3013219hypothetical protein
LOC_Os01g06360Os.38172.1.S1_x_at5/111+3013666..3018286transposon protein, putative, unclassified
LOC_Os01g06360Os.43567.1.S1_x_at2/111+3013666..3018286transposon protein, putative, unclassified
LOC_Os01g06370OsAffx.10555.1.S1_at11/111+3022632..3023192hypothetical protein
LOC_Os01g06380OsAffx.22769.1.S1_at11/111+3023615..3024883hypothetical protein
LOC_Os01g06390OsAffx.10553.1.S1_at11/111+3027396..3027965hypothetical protein
LOC_Os01g06400Os.30624.1.S1_at11/111+3028281..3029811expressed protein
LOC_Os01g06400Os.30624.2.S1_x_at8/111+3028281..3029811expressed protein
LOC_Os01g06410OsAffx.23135.1.S1_at11/111+3031030..3031590hypothetical protein
LOC_Os01g06420OsAffx.22993.1.S1_at11/111+3031861..3032493hypothetical protein
LOC_Os01g06430OsAffx.23042.1.S1_at11/111+3033492..3034091hypothetical protein
LOC_Os01g06440Os.31782.1.S1_at11/111+3034491..3035510expressed protein
LOC_Os01g06450OsAffx.10552.1.S1_x_at11/111+3036100..3038034Glycosyltransferase family 43 protein, expressed
LOC_Os01g06450OsAffx.10552.2.S1_x_at11/111+3036100..3038034Glycosyltransferase family 43 protein, expressed
LOC_Os01g06454Os.1460.2.S1_at10/111+3038282..3041148DNAJ protein, putative, expressed
LOC_Os01g06460Os.1460.1.S1_at11/111+3041290..3044021SAT5, putative, expressed
LOC_Os01g06460Os.1460.3.S1_x_at10/111+3041290..3044021SAT5, putative, expressed
LOC_Os01g06460Os.1460.3.S1_at1/111+3041290..3044021SAT5, putative, expressed
LOC_Os01g06470Os.174.1.S1_at11/111+3044234..3049067Importin alpha-2 subunit, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10555.1.S1_at--135--1651Chr01:3022961..3022985 (25 bp)
AGCGATCTCGCCTTCGCGATGTCCG
LOC_Os01g06370
OsAffx.10555.1.S1_at--69--4451Chr01:3022952..3022976 (25 bp)
GCCTTCGCGATGTCCGTCATGAACG
LOC_Os01g06370
OsAffx.10555.1.S1_at--795--2691Chr01:3022922..3022946 (25 bp)
AAGCTCCTCGTGTTCAGCGATGTGA
LOC_Os01g06370
OsAffx.10555.1.S1_at--110--10531Chr01:3022910..3022934 (25 bp)
TTCAGCGATGTGATCGGGATCGAAC
LOC_Os01g06370
OsAffx.10555.1.S1_at--672--5491Chr01:3022889..3022913 (25 bp)
GAACAGCTGGGCGACCAATACTTCC
LOC_Os01g06370
OsAffx.10555.1.S1_at--1127--4591Chr01:3022879..3022903 (25 bp)
GCGACCAATACTTCCCGGAGGGCAA
LOC_Os01g06370
OsAffx.10555.1.S1_at--1126--9411Chr01:3022846..3022870 (25 bp)
TCGTGCTCCATGACTCCGTGGAGGA
LOC_Os01g06370
OsAffx.10555.1.S1_at--728--5411Chr01:3022814..3022838 (25 bp)
GAAGCGTTCGCCATGGTAGACAGCT
LOC_Os01g06370
OsAffx.10555.1.S1_at--886--10631Chr01:3022808..3022832 (25 bp)
TTCGCCATGGTAGACAGCTGCCGCA
LOC_Os01g06370
OsAffx.10555.1.S1_at--254--5651Chr01:3022796..3022820 (25 bp)
GACAGCTGCCGCAGTCACCTGGATG
LOC_Os01g06370
OsAffx.10555.1.S1_at--272--8171Chr01:3022672..3022696 (25 bp)
GGAACGCGGAGTTGGGCACCGAGTT
LOC_Os01g06370
Target Sequence 
AGCGATCTCGCCTTCGCGATGTCCGTCATGAACGGGGCCAAGCTCCTCGTGTTCAGCGATGTGATCGGGATCGAACAGCT
GGGCGACCAATACTTCCCGGAGGGCAACGCCGGGGTCGTGCTCCATGACTCCGTGGAGGACGTGGAGGAAGCGTTCGCCA
TGGTAGACAGCTGCCGCAGTCACCTGGATGCGGTCCTCCTCCTGCTGGACCATCCGCGTCTCCCTGGCGTCGACGGCTTG
ATCCAGGAGGAGCTCGCCGCCGCCGATGGTGACCTCCAGGCCGCGATAGGGAACGCGGAGTTGGGCACCGAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10555.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis