Browse Element(s) Details


OsAffx.10806.1.S1_x_at

Description tigr:9632.m05179
TID=OsAffx.10806.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AL161566 putative protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5338011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g53320OsAffx.26591.1.S1_at11/114+31543868..31544446hypothetical protein
LOC_Os04g53330Os.23474.1.A1_at11/114+31545070..31547791RRM-containing protein, putative, expressed
LOC_Os04g53340NANA4+31547980..31548210hypothetical protein
LOC_Os04g53350OsAffx.4163.1.S1_at11/114+31549966..31554077expressed protein
LOC_Os04g53350Os.57431.1.S1_x_at7/114+31549966..31554077expressed protein
LOC_Os04g53360Os.50566.1.S1_at11/114+31558251..31561915expressed protein
LOC_Os04g53360OsAffx.19501.1.S1_x_at2/114+31558251..31561915expressed protein
LOC_Os04g53370NANA4+31567751..315688681-acyl-sn-glycerol-3-phosphate acyltransferase, putative, expressed
LOC_Os04g53380OsAffx.10806.1.S1_x_at11/114+31569399..31571427expressed protein
LOC_Os04g53380Os.17238.1.S1_at8/114+31569399..31571427expressed protein
LOC_Os04g53390OsAffx.4165.1.S1_at11/114+31582871..31584169BTB/POZ domain containing protein
LOC_Os04g53400OsAffx.4166.1.S1_at11/114+31590645..31591772BTB/POZ domain containing protein
LOC_Os04g53410Os.5294.1.S1_at11/114+31592598..31594336BTB/POZ domain containing protein, expressed
LOC_Os04g53420OsAffx.10931.3.S1_at2/114+31595909..31596364hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10806.1.S1_x_at--918--7271Chr04:31570712..31570736 (25 bp)
GTGCCTACTTTCTAAGATGCTGCGC
LOC_Os04g53380
OsAffx.10806.1.S1_x_at--889--9151Chr04:31570692..31570716 (25 bp)
TGCGCTGGTTAGTGGCTTCCATAAT
LOC_Os04g53380
OsAffx.10806.1.S1_x_at--955--3051Chr04:31570658..31570682 (25 bp)
AATCTCCTGCATCTCTCATGAAAAG
LOC_Os04g53380
OsAffx.10806.1.S1_x_at--1134--7951Chr04:31570600..31570624 (25 bp)
GGATCTCTTGAATCTTTCTTGAACT
LOC_Os04g53380
OsAffx.10806.1.S1_x_at--75--5451Chr04:31570481..31570505 (25 bp)
GAACCGAGATTTTTTGCCATCTGTG
LOC_Os04g53380
OsAffx.10806.1.S1_x_at--610--4931Chr04:31570443..31570467 (25 bp)
GCTTGTTGCTTCTTGACAGATCCAA
LOC_Os04g53380
OsAffx.10806.1.S1_x_at--694--6811Chr04:31570123..31570147 (25 bp)
GTTTATTCTCCCAGGCATTATTATC
LOC_Os04g53380
OsAffx.10806.1.S1_x_at--1128--5291Chr04:31570091..31570115 (25 bp)
GAAGGATCCTGCTATGCATCGCAAT
LOC_Os04g53380
OsAffx.10806.1.S1_x_at--269--3291Chr04:31570033..31570057 (25 bp)
CAAAGCCTCCTGGTTATGTTTTCTA
LOC_Os04g53380
OsAffx.10806.1.S1_x_at--316--2491Chr04:31570009..31570033 (25 bp)
AACAGCTTCAGTGCTGGGCTTTCAG
LOC_Os04g53380
OsAffx.10806.1.S1_x_at--819--9631Chr04:31569988..31570012 (25 bp)
TCAGGTTTTCCTGTGTTGTCACTTG
LOC_Os04g53380
Target Sequence 
GTGCCTACTTTCTAAGATGCTGCGCTGGTTAGTGGCTTCCATAATTCTTGGGAAAATCTCCTGCATCTCTCATGAAAAGT
GTGGAGACCTTACAAGGGATGCCAACAATTTTGGATCTCTTGAATCTTTCTTGAACTATACATATGATGAAAAGGTTGAA
ACTGTTGGCAGTCACAGTGCAGATGAGGCACTAGCTATAATTATACTGTACCTGCAAAAACATCTGAAAATGAACCGAGA
TTTTTTGCCATCTGTGGTGGCTGCTCTTTGCTTGTTGCTTCTTGACAGATCCAATAAACAAGGATCTAACCATGTTTATT
CTCCCAGGCATTATTATCAACCTTGGAAGGATCCTGCTATGCATCGCAATGAGGCAGAGCACCTAGAAGAAGAGCAGGCC
TGCCAAAGCCTCCTGGTTATGTTTTCTAACAGCTTCAGTGCTGGGCTTTCAGGTTTTCCTGTGTTGTCACTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10806.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis