Browse Element(s) Details


OsAffx.10811.1.A1_at

Description tigr:9633.m01723
TID=OsAffx.10811.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g535206/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g53496NANA4+31635367..31643224NB-ARC domain containing protein, expressed
LOC_Os04g53502Os.14269.1.S1_x_at9/114+31645122..31648340expressed protein
LOC_Os04g53510Os.49169.1.S1_at10/114+31656664..31660643F-box domain containing protein, expressed
LOC_Os04g53520Os.49330.1.S1_at10/114+31661475..31675514expressed protein
LOC_Os04g53520OsAffx.10811.1.A1_at6/114+31661475..31675514expressed protein
LOC_Os04g53520Os.39289.1.S1_at1/114+31661475..31675514expressed protein
LOC_Os04g53530Os.24287.1.A1_at11/114+31676191..31681094expressed protein
LOC_Os04g53540Os.12432.1.S1_a_at11/114+31681144..31686947START domain containing protein, expressed
LOC_Os04g53540Os.57415.1.S1_x_at2/114+31681144..31686947START domain containing protein, expressed
LOC_Os04g53540Os.10246.4.S1_x_at2/114+31681144..31686947START domain containing protein, expressed
LOC_Os04g53540OsAffx.29023.1.S1_x_at2/114+31681144..31686947START domain containing protein, expressed
LOC_Os04g53544NANA4+31691189..31691506transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10811.1.A1_at--1055--8154Chr10:15118842..15118866 (25 bp)
TGGAAGGAACGTAACTCCAGGGTCT
NONE
OsAffx.10811.1.A1_at--793--5253Chr05:11047323..11047347 (25 bp)
GAACGTAACTCCAGGGTCTTTGACT
NONE
OsAffx.10811.1.A1_at--825--7053Chr05:11047327..11047351 (25 bp)
GTAACTCCAGGGTCTTTGACTCTGT
NONE
OsAffx.10811.1.A1_at--650--2553Chr05:11047329..11047353 (25 bp)
AACTCCAGGGTCTTTGACTCTGTGC
NONE
OsAffx.10811.1.A1_at--205--1072Chr05:11047335..11047359 (25 bp)
AGGGTCTTTGACTCTGTGCTCTCTT
NONE
OsAffx.10811.1.A1_at--383--9554Chr12:3066184..3066206 (23 bp)
TCTTTGACTCTGTGCTCTCTTCGGT
NONE
OsAffx.10811.1.A1_at--330--9473Chr12:3066190..3066214 (25 bp)
TCTGTGCTCTCTTCGGTCGCAGTAG
NONE
OsAffx.10811.1.A1_at--932--9513Chr12:3066197..3066221 (25 bp)
TCTCTTCGGTCGCAGTAGTCCTAGA
NONE
OsAffx.10811.1.A1_at--749--10614Chr12:3066201..3066225 (25 bp)
TTCGGTCGCAGTAGTCCTAGAGTCC
NONE
OsAffx.10811.1.A1_at--86--7813Chr12:3066204..3066228 (25 bp)
GGTCGCAGTAGTCCTAGAGTCCATC
NONE
OsAffx.10811.1.A1_at--267--3454Chr12:3066209..3066233 (25 bp)
CAGTAGTCCTAGAGTCCATCCTTTC
NONE
Target Sequence 
TGGAAGGAACGTAACTCCAGGGTCTTTGACTCTGTGCTCTCTTCGGTCGCAGTAGTCCTAGAGTCCATCCTTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10811.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis