Browse Element(s) Details


OsAffx.10815.1.S1_at

Description gb:NM_188682.1
DB_XREF= gi:34904447
TID=OsAffx.10815.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) unnamed protein product (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g135907/11Isoflavone reductase homolog IRL, putative
LOC_Os01g136004/11NmrA-like family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g13550Os.3839.1.S1_at11/111+7574896..7579302Glycosyl hydrolase family 14 protein, expressed
LOC_Os01g13560Os.22846.1.A1_at9/111+7584993..7586435plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os01g13570Os.27709.1.S1_a_at11/111+7587215..7589545phosphoglycerate mutase family protein, expressed
LOC_Os01g13590OsAffx.10815.1.S1_at7/111+7599631..7600150Isoflavone reductase homolog IRL, putative
LOC_Os01g13600OsAffx.10815.1.S1_at4/111+7602164..7603347NmrA-like family protein, expressed
LOC_Os01g13610Os.23151.1.S1_at11/111+7615884..7621338NmrA-like family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006979biological_processresponse to oxidative stress
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10815.1.S1_at--490--3191Chr01:7602669..7602693 (25 bp)
CAATCCGGGATGCTGGCAATGTCAA
LOC_Os01g13600
OsAffx.10815.1.S1_at--1015--1531Chr01:7602337..7602361 (25 bp)
AGCATCCTGGGAGCCAAGCTTCGAG
LOC_Os01g13600
OsAffx.10815.1.S1_at--1105--1351Chr01:7602298..7602322 (25 bp)
AGAGCTTCAGGGATTCCTCACACCA
LOC_Os01g13600
OsAffx.10815.1.S1_at--612--511Chr01:7602274..7602298 (25 bp)
ATCGTATGCGGCTATCTGGTTCATG
LOC_Os01g13600
OsAffx.10815.1.S1_at--149--991Chr01:7600080..7600104 (25 bp)
AGGAGGACCCACGAACAGTCGACAA
LOC_Os01g13590
OsAffx.10815.1.S1_at--477--1271Chr01:7600056..7600080 (25 bp)
AGATACTGTATGTGCAGCCACCTGC
LOC_Os01g13590
OsAffx.10815.1.S1_at--1026--9131Chr01:7600034..7600058 (25 bp)
TGCGAATTTGTGCTCTCTCAATCAG
LOC_Os01g13590
OsAffx.10815.1.S1_at--632--3071Chr01:7600015..7600039 (25 bp)
AATCAGCTCGTCTCCGTGTTGGAGA
LOC_Os01g13590
OsAffx.10815.1.S1_at--681--5831Chr01:7599976..7600000 (25 bp)
GACCTCGAGAAATGCTACGTGCCCG
LOC_Os01g13590
OsAffx.10815.1.S1_at--1100--2391Chr01:7599781..7599959 (25 bp)
AAAAATCGAAGCAGCATCCCCGTTC
LOC_Os01g13590
OsAffx.10815.1.S1_at--557--10331Chr01:7599747..7599771 (25 bp)
TTTCAGTTGGCCATAGTGCACTCGG
LOC_Os01g13590
Target Sequence 
CAATCCGGGATGCTGGCAATGTCAAGNTANNNNNNNNNATGCTGGAGCCAGCAAGAAGCATCCTGGGAGCCAAGCTTCGA
GTCCGCGAAGCTCTGAGAGCTTCAGGGATTCCTCACACCATCGTATGCGGCTATCTGGTTCATGGCTTCCTGCTGCCCAA
GGCCGGAAACCCTGAAGCTGATGGCCCCCCGGTCACCACGGCAACCATCTTTGGTGATGGCAAACAAAAAGNNNTNTNNN
TGNANGANANNNNNATGAGCGCGGTGACAATAAAAGCCGAGGAGGACCCACGAACAGTCGACAAGATACTGTATGTGCAG
CCACCTGCGAATTTGTGCTCTCTCAATCAGCTCGTCTCCGTGTTGGAGAAGAAGATCGGCAGGGACCTCGAGAAATGCTA
CGTGCCCGAGGAAGAGCTTGCAATAAAAATCGAAGCAGCATCCCCGTTCCCGCTCAACTTTCAGTTGGCCATAGTGCACT
CGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10815.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis