Browse Element(s) Details


OsAffx.10943.2.S1_at

Description tigr:9639.m01065
TID=OsAffx.10943.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=FAR1 family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1122011/11transposon protein, putative, unclassified
LOC_Os01g068529/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g11170Os.45173.1.S1_x_at3/1111+6172095..6178899retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g11180OsAffx.18795.1.S1_at10/1111+6185658..6187151hypothetical protein
LOC_Os11g11200OsAffx.30924.1.S1_at11/1111+6191162..6193212hypothetical protein
LOC_Os11g11210Os.52283.1.S1_at11/1111+6196555..6200088ATP-dependent protease La, putative
LOC_Os11g11220OsAffx.10943.1.S1_at11/1111+6203411..6206380transposon protein, putative, unclassified
LOC_Os11g11220OsAffx.10943.1.S1_x_at11/1111+6203411..6206380transposon protein, putative, unclassified
LOC_Os11g11220OsAffx.10943.2.S1_at11/1111+6203411..6206380transposon protein, putative, unclassified
LOC_Os11g11230OsAffx.30925.1.S1_at11/1111+6211658..6212350hypothetical protein
LOC_Os11g11240NANA11+6214176..6217130hypothetical protein
LOC_Os11g11250Os.52908.1.S1_at7/1111+6220825..6221968expressed protein
LOC_Os11g11256NANA11+6223738..6226441hypothetical protein
LOC_Os11g11262NANA11+6228159..6229269retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10943.2.S1_at--1091--9212Chr01:24244338..24244362 (25 bp)
TCCAGCAATATTTAAAGTGTTTCAG
NONE
OsAffx.10943.2.S1_at--411--1113Chr01:24244353..24244377 (25 bp)
AGTGTTTCAGGAACAAGTGTTGCAA
NONE
OsAffx.10943.2.S1_at--898--6653Chr01:24244371..24244395 (25 bp)
GTTGCAAACATTGAACTGTGACCTA
NONE
OsAffx.10943.2.S1_at--32--10752Chr11:6204418..6204442 (25 bp)
TTGAACTGTGACCTATACTACTGTG
LOC_Os11g11220
OsAffx.10943.2.S1_at--154--2572Chr11:6204415..6204439 (25 bp)
AACTGTGACCTATACTACTGTGGTG
LOC_Os11g11220
OsAffx.10943.2.S1_at--1072--7372Chr11:6204411..6204435 (25 bp)
GTGACCTATACTACTGTGGTGATAT
LOC_Os11g11220
OsAffx.10943.2.S1_at--284--1752Chr11:6204408..6204432 (25 bp)
ACCTATACTACTGTGGTGATATTGA
LOC_Os11g11220
OsAffx.10943.2.S1_at--969--7372Chr11:6204393..6204417 (25 bp)
GTGATATTGATGCTGAAATGTACAA
LOC_Os11g11220
OsAffx.10943.2.S1_at--907--7032Chr11:6204379..6204398 (20 bp)
GTACAAATTAAAAGTTCACGAATCT
LOC_Os11g11220
OsAffx.10943.2.S1_at--597--2433Chr12:4672797..4672844 (24 bp)
AAAAGTTCACGAATCTGATGAAACA
NONE
OsAffx.10943.2.S1_at--796--9351Chr11:6203475..6203499 (25 bp)
TCGAACTTCTAAACAAAGTCAAGGG
LOC_Os11g11220
Target Sequence 
TCCAGCAATATTTAAAGTGTTTCAGGAACAAGTGTTGCAAACATTGAACTGTGACCTATACTACTGTGGTGATATTGATG
CTGAAATGTACAAATTAAAAGTTCACGAATCTGATGAAACATACTTAATGGCTGCCAACAATGCACAAAAGTTAGCAGAA
GATGTGGAGAAATACTTGAGTATAAGGCCTGATCCAGATTTGGATAAATCAGGCACAGAGGAAAATGTTGGCCCGAGTAA
AGCAAGAGGCATAAAGGTTAAGGAGAAAGCCATTCGTGGGTCGAGGAGACCAATTGGTGGTTTTGACAAGGCAACACAAT
GGAGTAAAAAGAAAAAGAGTGATTCAAGCACATCAAAGTGTCCAGTACAAGCAGAGGTGGTAACACCATCACTGCCATAC
ACCATGATGCAGATTCAGGGTCGTTCAGAGATTCCCACTAACTACAATCACATGCAAATGCCAGACTACTATCATGTTGA
AGGTGCTTCATTACTTCAGTCATCTGGTTATTTCGAACTTCTAAACAAAGTCAAGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10943.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis