Browse Element(s) Details


OsAffx.10957.1.S1_at

Description tigr:9629.m00720
TID=OsAffx.10957.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=glyoxalase family protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g078509/11lactoylglutathione lyase family protein, putative
LOC_Os10g366001/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g07830NANA1+3752090..3755422transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g07840Os.46306.1.S1_x_at5/111+3761348..3771443transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g07840Os.45976.1.S1_x_at4/111+3761348..3771443transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g07850OsAffx.10957.1.S1_x_at10/111+3776693..3778690lactoylglutathione lyase family protein, putative
LOC_Os01g07850OsAffx.10957.1.S1_at9/111+3776693..3778690lactoylglutathione lyase family protein, putative
LOC_Os01g07850OsAffx.30690.1.S1_x_at1/111+3776693..3778690lactoylglutathione lyase family protein, putative
LOC_Os01g07860NANA1+3780493..3783045retrotransposon protein, putative, unclassified
LOC_Os01g07870Os.15532.1.S1_at11/111+3801474..3807871multidrug resistance associated protein MRP2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005975biological_processcarbohydrate metabolism
GO:0004462molecular_functionlactoylglutathione lyase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10957.1.S1_at--956--5792Chr10:19251034..19251058 (25 bp)
GACGCTGAACCACGTCTCCCTGGTG
LOC_Os10g36600
OsAffx.10957.1.S1_at--413--2651Chr01:3776759..3776783 (25 bp)
AACCACGTCTCCCTGGTGTGCCGGT
LOC_Os01g07850
OsAffx.10957.1.S1_at--362--8612Chr05:8557836..8557855 (20 bp)
TGGTGTGCCGGTCGCTGTCCACCTC
NONE
OsAffx.10957.1.S1_at--467--5931Chr01:3777289..3777313 (25 bp)
GAGCATGCCACCCAATAAGGAGATC
LOC_Os01g07850
OsAffx.10957.1.S1_at--291--351Chr01:3777324..3777343 (20 bp)
ATAACCACATCTCATTCACGTGCGA
LOC_Os01g07850
OsAffx.10957.1.S1_at--624--2091NONE
ACATCTCATTCACGTGCGAGAGCAT
NONE
OsAffx.10957.1.S1_at--818--3591NONE
CATTCACGTGCGAGAGCATGGAGGC
NONE
OsAffx.10957.1.S1_at--32--991Chr01:3778362..3778386 (25 bp)
AGGAGATGGGCGTCCGGTACGTGCA
LOC_Os01g07850
OsAffx.10957.1.S1_at--1048--7231Chr01:3778547..3778571 (25 bp)
GTCGCCTGCAAGATCAGGCCCGTCA
LOC_Os01g07850
OsAffx.10957.1.S1_at--736--2791Chr01:3778556..3778580 (25 bp)
AAGATCAGGCCCGTCAAGCAGCCGT
LOC_Os01g07850
OsAffx.10957.1.S1_at--801--4011Chr01:3778578..3778602 (25 bp)
CGTCGGCGACGAAGCTGGGCAGCGT
LOC_Os01g07850
Target Sequence 
GACGCTGAACCACGTCTCCCTGGTGTGCCGGTCGCTGTCCACCTCGCTCACCTTCTACCGCGACTTCCTCGGCTTCGTCT
CCGTCCGCCGCCCGGGCTCCTTCGACTTCGACGGCGCATGGCTGTTCAACTACGGCATCGGCATCCACCTGCTGCAGGCA
GAGGACCCGGAGAGCATGCCACCCAATAAGGAGATCAACCCCAAGGATAACCACATCTCATTCACGTGCGAGAGCATGGA
GGCGGTGCAGCGGCGGCTGAAGGAGATGGGCGTCCGGTACGTGCAGCGGCGGGTGGAGGAAGGCGGCGTGTACGTGGACC
AGATCTTCTTCCACGACCCCGACGGCTTCATGATCGAGATCTGCACCTGCGACAAGCTCCCCGTCGTCCCCCTCGACGCC
GCCGCCGCCCACTCCATCTTCGCCGGCCGCTCGCCGCCGCCGCCCGTCGCCTGCAAGATCAGGCCCGTCAAGCAGCCGTC
GGCGACGAAGCTGGGCAGCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10957.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis