Browse Element(s) Details


OsAffx.11013.2.S1_s_at

Description tigr:9629.m01135
TID=OsAffx.11013.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1178011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g11740Os.31301.1.S1_at10/111+6349384..6355142GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g11750Os.6097.2.S1_x_at1/111+6358328..6360259GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g11760OsAffx.22107.1.S1_x_at11/111+6361865..6363859GDSL-like Lipase/Acylhydrolase family protein
LOC_Os01g11760OsAffx.22107.2.S1_x_at6/111+6361865..6363859GDSL-like Lipase/Acylhydrolase family protein
LOC_Os01g11770NANA1+6364840..6365319hypothetical protein
LOC_Os01g11780OsAffx.11013.2.S1_s_at11/111+6366221..6366868hypothetical protein
LOC_Os01g11790OsAffx.22107.4.S1_at11/111+6374063..6378639GDSL-like Lipase/Acylhydrolase family protein
LOC_Os01g11790OsAffx.22107.2.S1_x_at10/111+6374063..6378639GDSL-like Lipase/Acylhydrolase family protein
LOC_Os01g11790OsAffx.22107.1.S1_x_at6/111+6374063..6378639GDSL-like Lipase/Acylhydrolase family protein
LOC_Os01g11800OsAffx.23206.1.S1_x_at11/111+6379683..6380489hypothetical protein
LOC_Os01g11800OsAffx.26758.1.S1_x_at2/111+6379683..6380489hypothetical protein
LOC_Os01g11810Os.47366.1.A1_x_at11/111+6384493..6388269expressed protein
LOC_Os01g11810Os.3875.1.S1_at10/111+6384493..6388269expressed protein
LOC_Os01g11820OsAffx.9915.1.S1_x_at11/111+6391072..6392469expressed protein
LOC_Os01g11820OsAffx.9915.1.S1_at11/111+6391072..6392469expressed protein
LOC_Os01g11820Os.53712.1.S1_x_at11/111+6391072..6392469expressed protein
LOC_Os01g11820Os.49834.1.S1_at1/111+6391072..6392469expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11013.2.S1_s_at--1045--10851Chr01:6366489..6366513 (25 bp)
TTGGCTATATAGTATTCCCTCTTGC
LOC_Os01g11780
OsAffx.11013.2.S1_s_at--848--4871Chr01:6366492..6366516 (25 bp)
GCTATATAGTATTCCCTCTTGCTGC
LOC_Os01g11780
OsAffx.11013.2.S1_s_at--817--8191Chr01:6366545..6366569 (25 bp)
GGAAGTGCTCGTGACTTGTTCATCA
LOC_Os01g11780
OsAffx.11013.2.S1_s_at--214--3991Chr01:6366554..6366578 (25 bp)
CGTGACTTGTTCATCAGGAGGGAGT
LOC_Os01g11780
OsAffx.11013.2.S1_s_at--344--9271Chr01:6366564..6366588 (25 bp)
TCATCAGGAGGGAGTACGGTAGTAC
LOC_Os01g11780
OsAffx.11013.2.S1_s_at--1065--7011Chr01:6366585..6366609 (25 bp)
GTACAGTAGTACAGTTCTTAGTCGC
LOC_Os01g11780
OsAffx.11013.2.S1_s_at--300--7031Chr01:6366593..6366617 (25 bp)
GTACAGTTCTTAGTCGCTGATCGAT
LOC_Os01g11780
OsAffx.11013.2.S1_s_at--237--1231Chr01:6366597..6366621 (25 bp)
AGTTCTTAGTCGCTGATCGATCGAG
LOC_Os01g11780
OsAffx.11013.2.S1_s_at--211--10071Chr01:6366603..6366627 (25 bp)
TAGTCGCTGATCGATCGAGGTCATC
LOC_Os01g11780
OsAffx.11013.2.S1_s_at--1034--4131Chr01:6366607..6366631 (25 bp)
CGCTGATCGATCGAGGTCATCGTCG
LOC_Os01g11780
OsAffx.11013.2.S1_s_at--987--331Chr01:6366784..6366808 (25 bp)
ATACAATGGAACCACGGCCTCCAAG
LOC_Os01g11780
Target Sequence 
TTGGCTATATAGTATTCCCTCTTGCTGCTGCTGCTGCTGCACGGACGCAGGGAGGAGGAAGTGCTCGTGACTTGTTCATC
AGGAGGGAGTACGGTAGTACAGTAGTACAGTTCTTAGTCGCTGATCGATCGAGGTCATCGTCGTCGCCATCCATGGCGTG
GAGGAGCGGGTTCGGGGAGGAGGATGCGGTGACCGCGGGGGAGAGTGGCCTCGAGCTCAGCCTTGGCCTCCCCGCCTACT
TCTCCTCCTCCAAGCCCTCAGAGGGATCAACCGCTGCTCCTGCTTTTGCTCTCCAATACAATGGAACCACGGCCTCCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11013.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis