Browse Element(s) Details


OsAffx.11039.1.S1_at

Description tigr:9629.m01365
TID=OsAffx.11039.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1388011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g13830OsAffx.11037.1.S1_s_at11/111+7752643..7757322expressed protein
LOC_Os01g13840Os.5139.2.S1_at1/111+7761235..7762836hypothetical protein
LOC_Os01g13840Os.5139.2.S1_x_at1/111+7761235..7762836hypothetical protein
LOC_Os01g13850OsAffx.23229.1.S1_at11/111+7763827..7764555hypothetical protein
LOC_Os01g13860OsAffx.25616.1.S1_x_at5/111+7768762..7771084hypothetical protein
LOC_Os01g13860OsAffx.25616.2.S1_x_at2/111+7768762..7771084hypothetical protein
LOC_Os01g13860OsAffx.25616.5.S1_x_at2/111+7768762..7771084hypothetical protein
LOC_Os01g13870NANA1+7772847..7774130expressed protein
LOC_Os01g13880OsAffx.11039.1.S1_at11/111+7777053..7777856hypothetical protein
LOC_Os01g13890NANA1+7779605..7785497retrotransposon protein, putative, unclassified
LOC_Os01g13900NANA1+7786120..7787373retrotransposon protein, putative, unclassified
LOC_Os01g13910OsAffx.11040.1.S1_at10/111+7788834..7791248hypothetical protein
LOC_Os01g13920OsAffx.22057.1.S1_at3/111+7793070..7793492hypothetical protein
LOC_Os01g13930Os.43344.1.S1_at11/111+7800968..7802620expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11039.1.S1_at--404--8251Chr01:7777284..7777308 (25 bp)
GGCACTCTGTGCAAGTCGAGTTCAG
LOC_Os01g13880
OsAffx.11039.1.S1_at--1149--9711Chr01:7777366..7777390 (25 bp)
TCAAGATCTTCTTCCTTGTCGTCGA
LOC_Os01g13880
OsAffx.11039.1.S1_at--155--1331Chr01:7777410..7777434 (25 bp)
AGAGGCGAGTTCGTCTGGCGCTTCC
LOC_Os01g13880
OsAffx.11039.1.S1_at--822--8371Chr01:7777493..7777517 (25 bp)
GGCGAGGGACAGGATCACCTTCTCC
LOC_Os01g13880
OsAffx.11039.1.S1_at--310--1271Chr01:7777561..7777585 (25 bp)
AGATCAACTTCTCCGCTCGATTGTT
LOC_Os01g13880
OsAffx.11039.1.S1_at--199--4811Chr01:7777575..7777599 (25 bp)
GCTCGATTGTTCTATTGGGTCTCCC
LOC_Os01g13880
OsAffx.11039.1.S1_at--241--1851Chr01:7777658..7777682 (25 bp)
ACGAATTGCTCGTTGGCATGGTCTC
LOC_Os01g13880
OsAffx.11039.1.S1_at--778--2891Chr01:7777711..7777735 (25 bp)
AAGGTGCTCTACTGCACAGACTTCG
LOC_Os01g13880
OsAffx.11039.1.S1_at--992--1391Chr01:7777728..7777752 (25 bp)
AGACTTCGCGATGTCTCCATCTGGG
LOC_Os01g13880
OsAffx.11039.1.S1_at--692--5071Chr01:7777760..7777784 (25 bp)
GCAGCGGTTCTTCACCATAGTGGAG
LOC_Os01g13880
OsAffx.11039.1.S1_at--356--6051Chr01:7777797..7777821 (25 bp)
GAGATTGGTTCTCCTACAACGCAAT
LOC_Os01g13880
Target Sequence 
GGCACTCTGTGCAAGTCGAGTTCAGCCCCCGACACCCAGTTGGAGAAGCTCAAGTGCCTGGTGGAGCGGTCGGCGAGGCA
CCTCAAGATCTTCTTCCTTGTCGTCGACCACTACATAAGCCTGACGAGAGGCGAGTTCGTCTGGCGCTTCCTCGTCGGCG
CCGAGCAGTCCACTGTCAAACACCTCTACATCCACCTACGCAGCAGTTCGGCGAGGGACAGGATCACCTTCTCCTTCCAC
TATCTGAATCCGCTCCTTCAGAGCCACACGCTCCGCGAGATCAACTTCTCCGCTCGATTGTTCTATTGGGTCTCCCCGCC
CCCCGCCCTTCGCCCACCTCACGACTATCCACCTCAACTCCATCCGCATCACCGACGAATTGCTCGTTGGCATGGTCTCC
TTTTGTCGGCCCGTTCTCCGCGTCCTCAAGGTGCTCTACTGCACAGACTTCGCGATGTCTCCATCTGGGCACCAACGCAG
CGGTTCTTCACCATAGTGGAGTGTGAAGATCTCGAGATTGGTTCTCCTACAACGCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11039.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis