Browse Element(s) Details


OsAffx.11101.1.S1_s_at

Description gb:NM_183621.1
DB_XREF= gi:34894369
TID=OsAffx.11101.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) unnamed protein product (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1884011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g18800Os.3663.1.S1_at11/111+10619601..10624330CBL-interacting serine/threonine-protein kinase 1, putative, expressed
LOC_Os01g18810OsAffx.23298.1.S1_at11/111+10625169..10627319hypothetical protein
LOC_Os01g18830OsAffx.10719.2.A1_at11/111+10638081..10639170hypothetical protein
LOC_Os01g18840OsAffx.11101.1.S1_at11/111+10640065..10641626expressed protein
LOC_Os01g18840OsAffx.11101.1.S1_s_at11/111+10640065..10641626expressed protein
LOC_Os01g18840OsAffx.11101.2.S1_at11/111+10640065..10641626expressed protein
LOC_Os01g18850Os.20756.1.S1_at11/111+10647062..10653535SBP domain containing protein, expressed
LOC_Os01g18860Os.16099.1.S1_at11/111+10654244..10656901S-adenosylmethionine synthetase 1, putative, expressed
LOC_Os01g18870Os.54828.1.S1_at11/111+10661570..10663681Helix-loop-helix DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11101.1.S1_s_at--835--6451Chr01:10640211..10640235 (25 bp)
GATCAAGCTTGCTTCCAAGGAACAG
LOC_Os01g18840
OsAffx.11101.1.S1_s_at--345--8171Chr01:10640229..10640253 (25 bp)
GGAACAGTTGCTTGCTCAGGAATCA
LOC_Os01g18840
OsAffx.11101.1.S1_s_at--456--8911Chr01:10640416..10640440 (25 bp)
TGAGCAGCTGCGAACATCAATATGT
LOC_Os01g18840
OsAffx.11101.1.S1_s_at--670--10571Chr01:10640735..10640759 (25 bp)
TTCTTTGGGTGAATGCGAGCTTCGA
LOC_Os01g18840
OsAffx.11101.1.S1_s_at--723--971Chr01:10640773..10640797 (25 bp)
AGGAGCAGCTAGATCTTGTTCAGAA
LOC_Os01g18840
OsAffx.11101.1.S1_s_at--672--6691Chr01:10640798..10640822 (25 bp)
GTTCCTTGAAGCGAAAGAGCTCTCG
LOC_Os01g18840
OsAffx.11101.1.S1_s_at--287--6971Chr01:10641000..10641024 (25 bp)
GTACTGAAACTTGAATGCACCCTCA
LOC_Os01g18840
OsAffx.11101.1.S1_s_at--946--2771Chr01:10641032..10641056 (25 bp)
AAGAGCTCAGCTGCGAAAACTACAT
LOC_Os01g18840
OsAffx.11101.1.S1_s_at--336--9851Chr01:10641282..10641306 (25 bp)
TACAAAGCCGATTGCCGCTGAAGCA
LOC_Os01g18840
OsAffx.11101.1.S1_s_at--1034--8051Chr01:10641337..10641361 (25 bp)
GGAGAGCTCAGGCTTCAGGATCATA
LOC_Os01g18840
OsAffx.11101.1.S1_s_at--1083--3471Chr01:10641352..10641376 (25 bp)
CAGGATCATAGCCTCCATGTCAATA
LOC_Os01g18840
Target Sequence 
GATCAAGCTTGCTTCCAAGGAACAGTTGCTTGCTCAGGAATCAGAAAACAGGAAGAAGTTTGCTGAGTCGAGGGCGAGAA
GCATGGAGGAGGAGGTGAAGAAGCTGCATAAATGTTTACAGGACAAGGATGAGCAGCTGCGAACATCAATATGTAGCACT
GAACAGGTGATCATCACCCCCTTATACTACACTTACTGTCAATCTTCCAGTGTGATGTGTTCAGGAGGGCATGAGAAGAT
CAATTCTTTGGGTGAATGCGAGCTTCGAGTGAAGAAGGTAGAGGAGCAGCTAGATCTTGTTCAGAAGTTCCTTGAAGCGA
AAGAGCTCTCGCAGTTGGAGAAGAATCAAATGACAACGGTTCATGAGCTGAAGAAGAAGGTACTGAAACTTGAATGCACC
CTCAAAGTATCAAGAGCTCAGCTGCGAAAACTACATAAGATGGTAGAGCGAAGAGATAAACCTCTCAAAAAACTACAAAG
CCGATTGCCGCTGAAGCAGCAGACCGCCTGCGACAAGCAGAAGTTGTGGGAGAGCTCAGGCTTCAGGATCATAGCCTCCA
TGTCAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11101.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis