Browse Element(s) Details


OsAffx.11133.1.S1_at

Description tigr:9629.m01989
TID=OsAffx.11133.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2089011/11hypothetical protein
LOC_Os07g289101/11LSD1 zinc finger family protein, expressed
LOC_Os02g563601/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g20870OsAffx.2046.1.S1_at7/111+11630108..11630455hypothetical protein
LOC_Os01g20880Os.45752.1.S1_at11/111+11637965..11642376Protein kinase domain containing protein
LOC_Os01g20880OsAffx.11132.2.S1_x_at11/111+11637965..11642376Protein kinase domain containing protein
LOC_Os01g20890OsAffx.11133.1.S1_at11/111+11645388..11646793hypothetical protein
LOC_Os01g20894Os.56979.1.S1_at11/111+11649742..11650182expressed protein
LOC_Os01g20894Os.56979.1.S1_x_at10/111+11649742..11650182expressed protein
LOC_Os01g20900OsAffx.11132.1.S1_x_at11/111+11659964..11664325Protein kinase domain containing protein, expressed
LOC_Os01g20900Os.36147.2.S1_x_at11/111+11659964..11664325Protein kinase domain containing protein, expressed
LOC_Os01g20900Os.36147.1.S1_at10/111+11659964..11664325Protein kinase domain containing protein, expressed
LOC_Os01g20900OsAffx.11132.1.S1_at8/111+11659964..11664325Protein kinase domain containing protein, expressed
LOC_Os01g20910Os.45749.1.A1_at11/111+11668923..11669866Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g20920OsAffx.22904.1.S1_x_at11/111+11670469..11670831expressed protein
LOC_Os01g20920OsAffx.22904.1.S1_at11/111+11670469..11670831expressed protein
LOC_Os01g20930Os.45747.1.S1_x_at11/111+11671382..11673456Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006917biological_processinduction of apoptosis
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11133.1.S1_at--497--8751Chr01:11646541..11646694 (25 bp)
TGTTTCGAAACCCTTTCAATATTCT
LOC_Os01g20890
OsAffx.11133.1.S1_at--675--5551Chr01:11646676..11646700 (25 bp)
GAAACCCTTTCAATATTCTAATGTG
LOC_Os01g20890
OsAffx.11133.1.S1_at--263--1811Chr01:11646679..11646703 (25 bp)
ACCCTTTCAATATTCTAATGTGATG
LOC_Os01g20890
OsAffx.11133.1.S1_at--496--7391Chr01:11646698..11646722 (25 bp)
GTGATGAACAAGGTTATGTCCTTTG
LOC_Os01g20890
OsAffx.11133.1.S1_at--1000--1011Chr01:11646708..11646732 (25 bp)
AGGTTATGTCCTTTGAGCTCACTGA
LOC_Os01g20890
OsAffx.11133.1.S1_at--638--6791Chr01:11646710..11646734 (25 bp)
GTTATGTCCTTTGAGCTCACTGAAT
LOC_Os01g20890
OsAffx.11133.1.S1_at--713--771Chr01:11646713..11646737 (25 bp)
ATGTCCTTTGAGCTCACTGAATCTG
LOC_Os01g20890
OsAffx.11133.1.S1_at--274--7251Chr01:11646715..11646739 (25 bp)
GTCCTTTGAGCTCACTGAATCTGAA
LOC_Os01g20890
OsAffx.11133.1.S1_at--753--8911Chr01:11646721..11646745 (25 bp)
TGAGCTCACTGAATCTGAAATTTTC
LOC_Os01g20890
OsAffx.11133.1.S1_at--82--9371Chr01:11646734..11646758 (25 bp)
TCTGAAATTTTCACCTTTTATCTTA
LOC_Os01g20890
OsAffx.11133.1.S1_at--176--8974Chr07:16949662..16949681 (20 bp)
TGAAATTTTCACCTTTTATCTTATT
LOC_Os07g28910
Target Sequence 
TGTTTCGAAACCCTTTCAATATTCTAATGTGATGAACAAGGTTATGTCCTTTGAGCTCACTGAATCTGAAATTTTCACCT
TTTATCTTATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11133.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis