Browse Element(s) Details


OsAffx.11219.1.S1_at

Description tigr:9629.m02584
TID=OsAffx.11219.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2707011/11hypothetical protein
LOC_Os01g268967/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g27040Os.32330.2.S1_x_at11/111+15402729..15410171Chromatin remodelling complex ATPase chain, putative, expressed
LOC_Os01g27040Os.32330.1.S1_at10/111+15402729..15410171Chromatin remodelling complex ATPase chain, putative, expressed
LOC_Os01g27050NANA1+15412423..15413785Flavin-binding monooxygenase-like family protein
LOC_Os01g27060Os.45908.1.S1_at7/111+15420877..15423270hypothetical protein
LOC_Os01g27060OsAffx.6700.1.S1_at1/111+15420877..15423270hypothetical protein
LOC_Os01g27070OsAffx.11219.1.S1_at11/111+15426766..15427323hypothetical protein
LOC_Os01g27080Os.47463.1.S1_x_at6/111+15427763..15432785transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g27080Os.14491.2.S1_x_at5/111+15427763..15432785transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g27090NANA1+15434210..15437514transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g27100OsAffx.11220.1.S1_at11/111+15438398..15438937hypothetical protein
LOC_Os01g27110OsAffx.23412.2.S1_at11/111+15443287..15443784hypothetical protein
LOC_Os01g27110OsAffx.23412.1.S1_x_at4/111+15443287..15443784hypothetical protein
LOC_Os01g27120Os.35465.1.S1_at11/111+15445559..15446622expressed protein
LOC_Os01g27130OsAffx.23413.1.S1_x_at11/111+15447931..15450014hypothetical protein
LOC_Os01g27130OsAffx.23413.2.S1_at11/111+15447931..15450014hypothetical protein
LOC_Os01g27140Os.31088.1.S1_at2/111+15451678..15451989Glutaredoxin-like family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11219.1.S1_at--408--2952Chr01:15426813..15426837 (25 bp)
CACTAACCCGACAAACGATGACAAG
LOC_Os01g27070
OsAffx.11219.1.S1_at--1066--9312Chr01:15426928..15426952 (25 bp)
TCGACGACGGCCAACCTGGTGAAGC
LOC_Os01g27070
OsAffx.11219.1.S1_at--21--2652Chr01:15427006..15427030 (25 bp)
AACCACGGCAGGTGCCTGGCCATCA
LOC_Os01g27070
OsAffx.11219.1.S1_at--981--1032Chr01:15427015..15427039 (25 bp)
AGGTGCCTGGCCATCAACCGCTACA
LOC_Os01g27070
OsAffx.11219.1.S1_at--545--4632Chr01:15427069..15427093 (25 bp)
GCGATCTGCGCGCTGCTTTCCTTCA
LOC_Os01g27070
OsAffx.11219.1.S1_at--885--9591Chr01:15427103..15427127 (25 bp)
TCATCGACAGGAAGGGCCGGCCGTA
LOC_Os01g27070
OsAffx.11219.1.S1_at--535--4471Chr01:15427118..15427142 (25 bp)
GCCGGCCGTACTACGGGCTAGCCTT
LOC_Os01g27070
OsAffx.11219.1.S1_at--505--10512Chr01:15427183..15427207 (25 bp)
TTCAACTACGAGAAGCCGCGCCGTC
LOC_Os01g27070
OsAffx.11219.1.S1_at--1095--1852Chr01:15427238..15427262 (25 bp)
ACGACGACGATAGCTGGGAAGTTTA
LOC_Os01g27070
OsAffx.11219.1.S1_at--431--6631Chr01:15427258..15427282 (25 bp)
GTTTACTTCGTGGATTTCGACCCAG
LOC_Os01g27070
OsAffx.11219.1.S1_at--78--10631Chr01:15427264..15427288 (25 bp)
TTCGTGGATTTCGACCCAGAGGACA
LOC_Os01g27070
Target Sequence 
CACTAACCCGACAAACGATGACAAGAAGAAGAAGCCGGCTCAGGCGCCCGGCGCCGATGCCGATGCCGATGGCGGTGGCA
AGAAGAACAACAGCGACTACGTCGACAAGACGCTGTCGACGACGGCCAACCTGGTGAAGCTCCTCCCCACGGGCACCACG
CTGGCGTTCCAGGCGCTGGCGCCGTCCTTCACCAACCACGGCAGGTGCCTGGCCATCAACCGCTACATCTCCGGCGGCCT
CATCGCCTTCTGCTGCGCGATCTGCGCGCTGCTTTCCTTCACCGACAGCATCATCGACAGGAAGGGCCGGCCGTACTACG
GGCTAGCCTTCCCCGCCGACGAAGACACCGGCAAGGGCGGCTTCGTCCCCTTCAACTACGAGAAGCCGCGCCGTCCCAGC
AACGGCGCCGCCACCGCCGCCGCCGACGACGACGATAGCTGGGAAGTTTACTTCGTGGATTTCGACCCAGAGGACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11219.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis