Browse Element(s) Details


OsAffx.11240.1.S1_at

Description tigr:9629.m02702
TID=OsAffx.11240.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2823011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g28170NANA1+16113418..16117770transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g28184Os.47463.1.S1_x_at5/111+16119160..16123952transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g28184Os.14491.2.S1_x_at3/111+16119160..16123952transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g28200Os.40626.2.S1_x_at11/111+16125868..16128611hAT family dimerisation domain containing protein
LOC_Os01g28220OsAffx.11239.1.S1_at8/111+16134499..16134798hypothetical protein
LOC_Os01g28230OsAffx.11240.1.S1_at11/111+16141223..16142017hypothetical protein
LOC_Os01g28244OsAffx.655.1.S1_x_at1/111+16150575..16156715retrotransposon protein, putative, unclassified
LOC_Os01g28244OsAffx.8338.1.S1_x_at1/111+16150575..16156715retrotransposon protein, putative, unclassified
LOC_Os01g28244OsAffx.1197.1.S1_x_at1/111+16150575..16156715retrotransposon protein, putative, unclassified
LOC_Os01g28260OsAffx.21121.1.S1_x_at11/111+16162678..16163534hypothetical protein
LOC_Os01g28260OsAffx.21121.2.S1_at11/111+16162678..16163534hypothetical protein
LOC_Os01g28270Os.41248.4.S1_x_at3/111+16164282..16166787retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11240.1.S1_at--7--8111Chr01:16141500..16141524 (25 bp)
GGACCTACTTTGACTCATCTGAGCA
LOC_Os01g28230
OsAffx.11240.1.S1_at--317--1291Chr01:16141576..16141600 (25 bp)
AGATCCTTTCGCTGTTGTTCATGCA
LOC_Os01g28230
OsAffx.11240.1.S1_at--285--2711Chr01:16141657..16141681 (25 bp)
AAGCTTGCTTGTCCCTGAGGTAAAC
LOC_Os01g28230
OsAffx.11240.1.S1_at--265--8891Chr01:16141672..16141696 (25 bp)
TGAGGTAAACTCCATGCCATCTGTC
LOC_Os01g28230
OsAffx.11240.1.S1_at--1117--2031Chr01:16141708..16141732 (25 bp)
ACTTCAAAACATTCAGCCCTTCATA
LOC_Os01g28230
OsAffx.11240.1.S1_at--1037--5151Chr01:16141753..16141777 (25 bp)
GCAACGCTTGCAATCTGGATCATCA
LOC_Os01g28230
OsAffx.11240.1.S1_at--453--731Chr01:16141782..16141806 (25 bp)
ATGTTGAATCTTTTGGCCCACCATA
LOC_Os01g28230
OsAffx.11240.1.S1_at--604--2871Chr01:16141846..16141870 (25 bp)
AAGTGTGCAAGTTCCAGCTGGTCGC
LOC_Os01g28230
OsAffx.11240.1.S1_at--1110--5551Chr01:16141886..16141910 (25 bp)
GAAAGGGTTTACACATGCAGGCACT
LOC_Os01g28230
OsAffx.11240.1.S1_at--1051--5091Chr01:16141906..16141930 (25 bp)
GCACTGTCCTAATGCCACATTTAGT
LOC_Os01g28230
OsAffx.11240.1.S1_at--805--7731Chr01:16141946..16141970 (25 bp)
GGTGGTCACATGAGTGCCCATAGCA
LOC_Os01g28230
Target Sequence 
GGACCTACTTTGACTCATCTGAGCAAGCACACATCATGTCTACTGAATCCCCACCAGTCACCTCCTTGCTCCAGGGAGAT
CCTTTCGCTGTTGTTCATGCACATCTTAACACTACTGGAGTCTTGGATAATGGTCCAATCTTTGAGAATTCTGCTACAAG
CTTGCTTGTCCCTGAGGTAAACTCCATGCCATCTGTCTATCCTTTTCCACTTCAAAACATTCAGCCCTTCATATCTGGCA
CCATAAGTCAACAGCAACGCTTGCAATCTGGATCATCATCCCATGTTGAATCTTTTGGCCCACCATATGTCCCAAGGGAA
CAACCTGAACCAATAGGTGGTACAAAAAGTGTGCAAGTTCCAGCTGGTCGCTCTGGGGTCGTTAATGAAAGGGTTTACAC
ATGCAGGCACTGTCCTAATGCCACATTTAGTACACCACAAGCATATGGTGGTCACATGAGTGCCCATAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11240.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis