Browse Element(s) Details


OsAffx.11349.1.S1_at

Description gb:NM_193336.1
DB_XREF= gi:34913755
GEN=OSJNBa0051H17.26
TID=OsAffx.11349.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OSJNBa0051H17.26 (OSJNBa0051H17.26), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3648011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g36430NANA1+20547314..20553687retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g36440NANA1+20555149..20557212retrotransposon protein, putative, unclassified
LOC_Os01g36450OsAffx.21249.1.S1_at9/111+20561404..20562873transposon protein, putative, unclassified
LOC_Os01g36450Os.25438.1.A1_at2/111+20561404..20562873transposon protein, putative, unclassified
LOC_Os01g36460Os.10115.1.S1_at11/111+20567386..20569587Myb-related protein Hv33, putative, expressed
LOC_Os01g36460Os.57514.1.S1_x_at1/111+20567386..20569587Myb-related protein Hv33, putative, expressed
LOC_Os01g36470OsAffx.11348.2.S1_x_at11/111+20572238..20572864expressed protein
LOC_Os01g36470OsAffx.11348.2.S1_s_at11/111+20572238..20572864expressed protein
LOC_Os01g36470OsAffx.11348.1.S1_x_at7/111+20572238..20572864expressed protein
LOC_Os01g36470OsAffx.11348.1.S1_at4/111+20572238..20572864expressed protein
LOC_Os01g36480OsAffx.11349.1.S1_at11/111+20576093..20576875hypothetical protein
LOC_Os01g36490OsAffx.23529.1.S1_at11/111+20578181..20578490hypothetical protein
LOC_Os01g36500OsAffx.719.1.S1_x_at11/111+20582150..20587565Protein kinase domain containing protein
LOC_Os01g36500OsAffx.719.3.S1_at10/111+20582150..20587565Protein kinase domain containing protein
LOC_Os01g36500OsAffx.719.1.S1_s_at8/111+20582150..20587565Protein kinase domain containing protein
LOC_Os01g36500OsAffx.719.4.S1_at1/111+20582150..20587565Protein kinase domain containing protein
LOC_Os01g36500OsAffx.9446.1.S1_at1/111+20582150..20587565Protein kinase domain containing protein
LOC_Os01g36500OsAffx.8277.2.S1_at1/111+20582150..20587565Protein kinase domain containing protein
LOC_Os01g36510OsAffx.9013.1.S1_x_at11/111+20589075..20590880hypothetical protein
LOC_Os01g36520OsAffx.11351.1.S1_at10/111+20592580..20594071hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11349.1.S1_at--1068--8231Chr01:20576824..20576848 (25 bp)
GGCAGCGAGTTATCGAACGTCACCC
LOC_Os01g36480
OsAffx.11349.1.S1_at--876--5451Chr01:20576810..20576834 (25 bp)
GAACGTCACCCTCGAGGATGTTTCC
LOC_Os01g36480
OsAffx.11349.1.S1_at--198--1811Chr01:20576734..20576758 (25 bp)
ACCCCTTCTTGTAGGCCAGAGGATG
LOC_Os01g36480
OsAffx.11349.1.S1_at--349--7731Chr01:20576708..20576732 (25 bp)
GGTGGTGAGTCATGGCTACCCTAAC
LOC_Os01g36480
OsAffx.11349.1.S1_at--990--8691Chr01:20576667..20576691 (25 bp)
TGTCGCTACAAGCATTGACCCTTAA
LOC_Os01g36480
OsAffx.11349.1.S1_at--300--6051Chr01:20576633..20576657 (25 bp)
GAGATATACCTCTGATCGCTTGGAT
LOC_Os01g36480
OsAffx.11349.1.S1_at--486--531Chr01:20576619..20576643 (25 bp)
ATCGCTTGGATCTGACGTCATTGGC
LOC_Os01g36480
OsAffx.11349.1.S1_at--235--7131Chr01:20576603..20576627 (25 bp)
GTCATTGGCACATCGGCTCCTAAAC
LOC_Os01g36480
OsAffx.11349.1.S1_at--677--451Chr01:20576565..20576589 (25 bp)
ATCTCGATTCATCACCAGCGTGGAG
LOC_Os01g36480
OsAffx.11349.1.S1_at--1020--7631Chr01:20576541..20576565 (25 bp)
GGGAGAGCCGTCTCTACTCACAAAG
LOC_Os01g36480
OsAffx.11349.1.S1_at--501--10051Chr01:20576406..20576430 (25 bp)
TAGTACTGGATCGACGCAGGCCATG
LOC_Os01g36480
Target Sequence 
GGCAGCGAGTTATCGAACGTCACCCTCGAGGATGTTTCCCCGAGGCTCGAGCACCTCGGCCACCACCTCCAACATCCTCC
CACTCCGATCACCCCTTCTTGTAGGCCAGAGGATGAGGTGGTGAGTCATGGCTACCCTAACCTCGAGCTCCGCCTCCTGT
CGCTACAAGCATTGACCCTTAAGGAGAGCTTGAGATATACCTCTGATCGCTTGGATCTGACGTCATTGGCACATCGGCTC
CTAAACCACCCTCCTTGCCATCTCGATTCATCACCAGCGTGGAGGGAGAGCCGTCTCTACTCACAAAGCTCTGTGCCCCT
CATCCGTGGCAAGCTCCTCTGCACTGCCCGGGGCCTGGCTGGTCTCCAACCACTGGTCCAGCCTCGACCTCCTCATGGCC
TCAGACCATGCCGCCTCCTAGTACTGGATCGACGCAGGCCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11349.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis