Browse Element(s) Details


OsAffx.11444.1.S1_at

Description tigr:9629.m04091
TID=OsAffx.11444.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=ribosomal protein S11, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4264011/11ribosomal protein S11 containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g42600OsAffx.21367.1.S1_at2/111+24556750..24557001hypothetical protein
LOC_Os01g42610OsAffx.11443.1.S1_at11/111+24561477..24565837Terpene synthase family, metal binding domain containing protein
LOC_Os01g42620Os.29404.2.S1_at11/111+24567105..24572064pentatricopeptide, putative, expressed
LOC_Os01g42620Os.29404.2.S1_x_at11/111+24567105..24572064pentatricopeptide, putative, expressed
LOC_Os01g42620Os.29404.1.S1_at10/111+24567105..24572064pentatricopeptide, putative, expressed
LOC_Os01g42630Os.14338.1.S1_at10/111+24573980..24576193C-5 cytosine-specific DNA methylase family protein, expressed
LOC_Os01g42630Os.14338.1.S1_x_at7/111+24573980..24576193C-5 cytosine-specific DNA methylase family protein, expressed
LOC_Os01g42640OsAffx.11444.1.S1_at11/111+24576732..24577585ribosomal protein S11 containing protein
LOC_Os01g42650Os.3455.1.S1_at11/111+24582170..24586788cytochrome c oxidase subunit, putative, expressed
LOC_Os01g42660OsAffx.23637.2.S1_s_at11/111+24591364..24593347hypothetical protein
LOC_Os01g42660OsAffx.23637.1.S1_at3/111+24591364..24593347hypothetical protein
LOC_Os01g42670OsAffx.23638.1.S1_at9/111+24596639..24599250hypothetical protein
LOC_Os01g42670OsAffx.23637.1.S1_at2/111+24596639..24599250hypothetical protein
LOC_Os01g42679NANA1+24599981..24600723NA

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0005843cellular_componentcytosolic small ribosomal subunit (sensu Eukaryota)
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11444.1.S1_at--443--10111Chr01:24576905..24576929 (25 bp)
TATGGGTTTGTTCTCTATGCCCGGC
LOC_Os01g42640
OsAffx.11444.1.S1_at--148--5991Chr01:24576955..24576979 (25 bp)
GAGACCGTCTCATGGAGTCACAGCA
LOC_Os01g42640
OsAffx.11444.1.S1_at--551--2151Chr01:24576974..24576998 (25 bp)
ACAGCAGCTGCCTCAAGACTACCGT
LOC_Os01g42640
OsAffx.11444.1.S1_at--979--9711Chr01:24576986..24577010 (25 bp)
TCAAGACTACCGTGCCAATGTGCCG
LOC_Os01g42640
OsAffx.11444.1.S1_at--1161--2971Chr01:24577002..24577026 (25 bp)
AATGTGCCGCGTTCTGGTGACACGA
LOC_Os01g42640
OsAffx.11444.1.S1_at--341--1611Chr01:24577132..24577156 (25 bp)
AGCTGGTGGCGAGAATCCCTCCTAC
LOC_Os01g42640
OsAffx.11444.1.S1_at--266--2132Chr01:24577188..24577212 (25 bp)
ACAAGCAATCTCTGGTGAAAGGGAA
LOC_Os01g42640
OsAffx.11444.1.S1_at--299--551Chr01:24577297..24577321 (25 bp)
ATCCGCTGGTTGTTTGGAGGACAAG
LOC_Os01g42640
OsAffx.11444.1.S1_at--451--3791Chr01:24577332..24577356 (25 bp)
CTCGTCTCTCCAAATATGCTACTGA
LOC_Os01g42640
OsAffx.11444.1.S1_at--310--791Chr01:24577394..24577418 (25 bp)
ATGGGTTTGAAATCCGTGGTGATGA
LOC_Os01g42640
OsAffx.11444.1.S1_at--247--8671Chr01:24577513..24577537 (25 bp)
TGTGGTGTTTATCCACGATGTGACC
LOC_Os01g42640
Target Sequence 
TATGGGTTTGTTCTCTATGCCCGGCGGCGACACACGCCAACCTTCATATGGAGACCGTCTCATGGAGTCACAGCAGCTGC
CTCAAGACTACCGTGCCAATGTGCCGCGTTCTGGTGACACGATGGGAGTAGGCAAATGGTCCAGGATAGCTGGTGGCGAG
AATCCCTCCTACTTCGGGACCCCATCACACATCTTTGACGAACACAAGCAATCTCTGGTGAAAGGGAAGAGAGATTTTGT
CTATGTCTTGCTCAAGAGAAACAAGACCTTTGTGACCGTGACAGACGTTCGGGGGAACAGAAAGACCGGGGCATCCGCTG
GTTGTTTGGAGGACAAGAAAGGGCGCTCTCGTCTCTCCAAATATGCTACTGAAGCAACCGCAGAACATGTCGGGCGAGCC
GCGAGGAAGATGGGTTTGAAATCCGTGGTGATGAAAGTGAAAGGAACTGTGTTCTTCAATAAGAAGAAGAAAGTGATCCT
GAGCTTCAGAGAAGGCTTTCGGGGTGAAAGAGTAAGGGAGCAATCTCCTGTGGTGTTTATCCACGATGTGACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11444.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis