Browse Element(s) Details


OsAffx.11564.1.S1_at

Description tigr:9629.m05011
TID=OsAffx.11564.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Ras family
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g517008/11Ras-related protein Rab7, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g51670Os.37243.1.S1_at11/111+30035223..30036213expressed protein
LOC_Os01g51670Os.37243.2.S1_x_at9/111+30035223..30036213expressed protein
LOC_Os01g51670Os.37243.2.S1_at1/111+30035223..30036213expressed protein
LOC_Os01g51680OsAffx.23752.1.S1_at11/111+30044626..30045193hypothetical protein
LOC_Os01g51690Os.30634.1.S1_at10/111+30047770..30049912WRKY DNA binding domain containing protein, expressed
LOC_Os01g51700Os.40181.1.S1_at11/111+30056975..30061949Ras-related protein Rab7, putative, expressed
LOC_Os01g51700Os.40181.2.S1_s_at10/111+30056975..30061949Ras-related protein Rab7, putative, expressed
LOC_Os01g51700OsAffx.11564.1.S1_at8/111+30056975..30061949Ras-related protein Rab7, putative, expressed
LOC_Os01g51710Os.27635.3.A1_x_at11/111+30063193..30066296zinc finger protein, putative, expressed
LOC_Os01g51710Os.27635.2.S1_at11/111+30063193..30066296zinc finger protein, putative, expressed
LOC_Os01g51710OsAffx.20867.1.S1_x_at2/111+30063193..30066296zinc finger protein, putative, expressed
LOC_Os01g51720OsAffx.11565.1.S1_x_at11/111+30066970..30069374expressed protein
LOC_Os01g51720OsAffx.11565.2.S1_at11/111+30066970..30069374expressed protein
LOC_Os01g51720OsAffx.11565.1.S1_at11/111+30066970..30069374expressed protein
LOC_Os01g51730NANA1+30070919..30071218hypothetical protein
LOC_Os01g51740OsAffx.11713.2.S1_at9/111+30082096..30082680hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005525molecular_functionGTP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11564.1.S1_at--612--8651Chr01:30060182..30060206 (25 bp)
TGGGCGGCTCATTTCTCCACATTTA
LOC_Os01g51700
OsAffx.11564.1.S1_at--545--2071Chr01:30060164..30060188 (25 bp)
ACATTTAAAATGCTTCTCTCTCTCC
LOC_Os01g51700
OsAffx.11564.1.S1_at--661--3371Chr01:30060128..30060150 (23 bp)
CAGCGATTTCCGCAAGTGACAGGCT
LOC_Os01g51700
OsAffx.11564.1.S1_at--926--8951NONE
TGACAGGCTTACAGCCTCCTCTGAA
NONE
OsAffx.11564.1.S1_at--426--3811Chr01:30059883..30059907 (25 bp)
CTCCTCTGAACTGGAAGATCAATTT
LOC_Os01g51700
OsAffx.11564.1.S1_at--779--7611NONE
GGGAAATCCTTGCTGAGTTCATTGA
NONE
OsAffx.11564.1.S1_at--289--31Chr01:30058466..30058796 (25 bp)
ATTGAGAATTTTACGGCTAGCCCAT
LOC_Os01g51700
OsAffx.11564.1.S1_at--52--4671NONE
GCGTGATCAGGACATATCTAGCTTG
NONE
OsAffx.11564.1.S1_at--94--6411Chr01:30057352..30057376 (25 bp)
GATCTTTTTTGGTTACTCACCGTCA
LOC_Os01g51700
OsAffx.11564.1.S1_at--1077--7871Chr01:30057342..30057366 (25 bp)
GGTTACTCACCGTCATTTTTCCTGG
LOC_Os01g51700
OsAffx.11564.1.S1_at--1117--8451Chr01:30057320..30057344 (25 bp)
TGGCCTTCAGCTACTTCCAGACGGT
LOC_Os01g51700
Target Sequence 
TGGGCGGCTCATTTCTCCACATTTAAAATGCTTCTCTCTCTCCCACCCCCTCTCAACAGCGATTTCCGCAAGTGACAGGC
TTACAGCCTCCTCTGAACTGGAAGATCAATTTGAGATCTTCGAGCATATTCGAGTGTTCAATGTGACTACTGTCACTTCA
ACCAATACAAAAGATGAGACTTTACTACTGTGGAGCGGCTTTTTGCTAAAAGATGAGGGGGAAATCCTTGCTGAGTTCAT
TGAGAATTTTACGGCTAGCCCATCAGATCCCAAAACTTTTCCATTCATCTTACTTGGGAACAAGATTGACGTAGATGGAG
GGAAAAGCAGAGTGGTTTCTGAGAAAAAAGCAATGGAGTGGTGTTCATCCAAAGGCAATATTCCTTATTTTGAAACTTCT
GCAAAAGAGGACCGCAATGTCGACAGTGCGTTCTTGTCTGTCGCTAAGCTTGCTTTAGAGCATGAGCGTGATCAGGACAT
ATCTAGCTTGATCTTTTTTGGTTACTCACCGTCATTTTTCCTGGCCTTCAGCTACTTCCAGACGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11564.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis