Browse Element(s) Details


OsAffx.11565.2.S1_at

Description tigr:9629.m05013
TID=OsAffx.11565.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5172011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g51680OsAffx.23752.1.S1_at11/111+30044626..30045193hypothetical protein
LOC_Os01g51690Os.30634.1.S1_at10/111+30047770..30049912WRKY DNA binding domain containing protein, expressed
LOC_Os01g51700Os.40181.1.S1_at11/111+30056975..30061949Ras-related protein Rab7, putative, expressed
LOC_Os01g51700Os.40181.2.S1_s_at10/111+30056975..30061949Ras-related protein Rab7, putative, expressed
LOC_Os01g51700OsAffx.11564.1.S1_at8/111+30056975..30061949Ras-related protein Rab7, putative, expressed
LOC_Os01g51710Os.27635.3.A1_x_at11/111+30063193..30066296zinc finger protein, putative, expressed
LOC_Os01g51710Os.27635.2.S1_at11/111+30063193..30066296zinc finger protein, putative, expressed
LOC_Os01g51710OsAffx.20867.1.S1_x_at2/111+30063193..30066296zinc finger protein, putative, expressed
LOC_Os01g51720OsAffx.11565.1.S1_x_at11/111+30066970..30069374expressed protein
LOC_Os01g51720OsAffx.11565.2.S1_at11/111+30066970..30069374expressed protein
LOC_Os01g51720OsAffx.11565.1.S1_at11/111+30066970..30069374expressed protein
LOC_Os01g51730NANA1+30070919..30071218hypothetical protein
LOC_Os01g51740OsAffx.11713.2.S1_at9/111+30082096..30082680hypothetical protein
LOC_Os01g51754Os.49305.1.S1_at11/111+30087617..30096878Alpha amylase, catalytic domain containing protein, expressed
LOC_Os01g51754Os.49305.2.S1_at11/111+30087617..30096878Alpha amylase, catalytic domain containing protein, expressed
LOC_Os01g51754Os.24868.2.S1_x_at11/111+30087617..30096878Alpha amylase, catalytic domain containing protein, expressed
LOC_Os01g51754Os.49305.2.S1_x_at11/111+30087617..30096878Alpha amylase, catalytic domain containing protein, expressed
LOC_Os01g51754Os.24868.1.S1_at11/111+30087617..30096878Alpha amylase, catalytic domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11565.2.S1_at--961--8211Chr01:30068774..30068798 (25 bp)
GGAATACCAGCATCTCATTACCAAT
LOC_Os01g51720
OsAffx.11565.2.S1_at--830--3011Chr01:30068813..30068837 (25 bp)
AATGCTACTTGCGTGGGCTGCAGAA
LOC_Os01g51720
OsAffx.11565.2.S1_at--759--8331Chr01:30068828..30068852 (25 bp)
GGCTGCAGAAGCTTATCCTTTATCT
LOC_Os01g51720
OsAffx.11565.2.S1_at--827--8971Chr01:30068852..30068876 (25 bp)
TGAACACAACGACGGAGCCATTGCT
LOC_Os01g51720
OsAffx.11565.2.S1_at--588--2871Chr01:30068878..30068902 (25 bp)
AAGTGGTGTCGTGCCTCCAGAACAG
LOC_Os01g51720
OsAffx.11565.2.S1_at--598--10391Chr01:30069040..30069064 (25 bp)
TTTTCGATGATCGTCGCGCAAGCAC
LOC_Os01g51720
OsAffx.11565.2.S1_at--464--5251Chr01:30069116..30069140 (25 bp)
GAATCATCTATCAACTGTCACCTTC
LOC_Os01g51720
OsAffx.11565.2.S1_at--1139--3711Chr01:30069173..30069197 (25 bp)
CTACATCGACCTCTCAAAGTTGCTG
LOC_Os01g51720
OsAffx.11565.2.S1_at--429--7911Chr01:30069223..30069247 (25 bp)
GGTTGAGCATCAAGTATCGGCGCTT
LOC_Os01g51720
OsAffx.11565.2.S1_at--239--10151Chr01:30069237..30069261 (25 bp)
TATCGGCGCTTGGAGGATCAGGACC
LOC_Os01g51720
OsAffx.11565.2.S1_at--1138--6011Chr01:30069279..30069303 (25 bp)
GAGAGTGTCCAAAGCGAGCTCCCTC
LOC_Os01g51720
Target Sequence 
GGAATACCAGCATCTCATTACCAATGAGGTTGCCCAAAAAATGCTACTTGCGTGGGCTGCAGAAGCTTATCCTTTATCTG
AACACAACGACGGAGCCATTGCTCAAGTGGTGTCGTGCCTCCAGAACAGCTCTCCGAACCTCAAGGTTCTCGAGATCAAG
AATGATTTTTTCGATGATCGTCGCGCAAGCACTGACGTGCCGGACTTCTGGGAGAAGAACATGGGTGCAGCTGAATGTGT
TCAGAATCATCTATCAACTGTCACCTTCTACCTGAACAGTGAGTGCTTCCAGGGACGCTCCTACATCGACCTCTCAAAGT
TGCTGCTGATGCGAGCCAGGGCTGTCGAAAGGTTGAGCATCAAGTATCGGCGCTTGGAGGATCAGGACCGGTACTCCGCT
GAGCTGGAGAGTGTCCAAAGCGAGCTCCCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11565.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis