Browse Element(s) Details


OsAffx.11615.1.S1_at

Description tigr:9629.m05433
TID=OsAffx.11615.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Cupin, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5563011/11Glutelin type-A 3 precursor, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g55590Os.6706.1.S1_at9/111+32359021..32362185expressed protein
LOC_Os01g55590Os.6706.2.S1_x_at3/111+32359021..32362185expressed protein
LOC_Os01g55590Os.42065.1.S1_x_at3/111+32359021..32362185expressed protein
LOC_Os01g55600Os.32224.1.S1_at10/111+32359575..32361859POT family protein, expressed
LOC_Os01g55610Os.34952.1.S1_at10/111+32364872..32367226POT family protein, expressed
LOC_Os01g55620OsAffx.13041.1.S1_x_at8/111+32376810..32377614transposon protein, putative, unclassified
LOC_Os01g55620OsAffx.13041.4.S1_x_at5/111+32376810..32377614transposon protein, putative, unclassified
LOC_Os01g55620OsAffx.13041.4.S1_at5/111+32376810..32377614transposon protein, putative, unclassified
LOC_Os01g55620OsAffx.13041.1.S1_at3/111+32376810..32377614transposon protein, putative, unclassified
LOC_Os01g55620Os.28110.1.S1_x_at1/111+32376810..32377614transposon protein, putative, unclassified
LOC_Os01g55630OsAffx.11615.1.S1_at11/111+32379814..32381196Glutelin type-A 3 precursor, putative
LOC_Os01g55630Os.8013.1.S1_at3/111+32379814..32381196Glutelin type-A 3 precursor, putative
LOC_Os01g55630Os.22346.1.S1_x_at1/111+32379814..32381196Glutelin type-A 3 precursor, putative
LOC_Os01g55630OsAffx.27508.71.S1_s_at1/111+32379814..32381196Glutelin type-A 3 precursor, putative
LOC_Os01g55630Os.12807.2.S1_x_at1/111+32379814..32381196Glutelin type-A 3 precursor, putative
LOC_Os01g55640NANA1+32384003..32384981Seven in absentia protein family protein
LOC_Os01g55650Os.13102.1.S1_at11/111+32384248..32389677patatin, putative, expressed
LOC_Os01g55650Os.13102.1.S2_at5/111+32384248..32389677patatin, putative, expressed
LOC_Os01g55660NANA1+32392337..32396694retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g55670NANA1+32397767..32398923expressed protein
LOC_Os01g55690Os.22346.1.S1_x_at11/111+32403582..32405591Glutelin type-A 1 precursor, putative, expressed
LOC_Os01g55690OsAffx.27508.71.S1_s_at11/111+32403582..32405591Glutelin type-A 1 precursor, putative, expressed
LOC_Os01g55690Os.22346.2.S1_x_at11/111+32403582..32405591Glutelin type-A 1 precursor, putative, expressed
LOC_Os01g55690Os.12807.2.S1_x_at4/111+32403582..32405591Glutelin type-A 1 precursor, putative, expressed
LOC_Os01g55690Os.16515.1.S1_x_at2/111+32403582..32405591Glutelin type-A 1 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045735molecular_functionnutrient reservoir activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11615.1.S1_at--1036--1971Chr01:32380323..32380347 (25 bp)
ACTGCTTAGTGAGGCTCTTGGCATT
LOC_Os01g55630
OsAffx.11615.1.S1_at--261--8931Chr01:32380383..32380407 (25 bp)
TGACCAACGCGGAGAAATTGTTCTT
LOC_Os01g55630
OsAffx.11615.1.S1_at--412--3171Chr01:32380398..32380422 (25 bp)
AATTGTTCTTGTCGAGCATGGGCTT
LOC_Os01g55630
OsAffx.11615.1.S1_at--646--1531Chr01:32380412..32380436 (25 bp)
AGCATGGGCTTGCATTTCTAAAACC
LOC_Os01g55630
OsAffx.11615.1.S1_at--100--2491Chr01:32380520..32380544 (25 bp)
AAGGTGGTCACTCTAATGGTTTGGA
LOC_Os01g55630
OsAffx.11615.1.S1_at--1053--10391Chr01:32380552..32380796 (25 bp)
TTTTGTACCATGAGGAACGCGCTCC
LOC_Os01g55630
OsAffx.11615.1.S1_at--807--10231Chr01:32380806..32380830 (25 bp)
TTTGGAACATCAATGCTCATAGCAT
LOC_Os01g55630
OsAffx.11615.1.S1_at--1005--131Chr01:32380838..32380862 (25 bp)
ATTACTCAAGGTCATGCCGGGTTCA
LOC_Os01g55630
OsAffx.11615.1.S1_at--872--2331Chr01:32380881..32380902 (22 bp)
AAAGACAGTGTTTGATGGAGAGCCA
LOC_Os01g55630
OsAffx.11615.1.S1_at--982--10651Chr01:32381041..32381065 (25 bp)
TTCCGTGCACTTCCTAACAATGTTT
LOC_Os01g55630
OsAffx.11615.1.S1_at--705--8031Chr01:32381127..32381151 (25 bp)
GGAGTCAGGCGTGTTCACTCCTAGT
LOC_Os01g55630
Target Sequence 
ACTGCTTAGTGAGGCTCTTGGCATTAGCAGTGGAGTAGCAAGGCAACTCCAATGTCAAAATGACCAACGCGGAGAAATTG
TTCTTGTCGAGCATGGGCTTGCATTTCTAAAACCATATGCATCAGTGCAAGAGCAACAACAAGAACAGGTGCAACCAAGT
GAGTATAGACAAACACAATATCAACAAAAACAATTTCAAGGTGGTCACTCTAATGGTTTGGATGAGACCTTTTGTACCAT
GAGGAACGCGCTCCTTTCACCTTTTTGGAACATCAATGCTCATAGCATTGTCTATATTACTCAAGGTCATGCCGGGTTCA
AGTTGTCAACAACAATGGAAAGACAGTGTTTGATGGAGAGCCAAATCGTGGGAAAGAATTCCATCTTCCGTGCACTTCCT
AACAATGTTTTGGCAAATGCATATCGTATCTCAAGAGAAGAAGCTAGGAGACTCAAGCACAACAGGAGAGTGGAGTCAGG
CGTGTTCACTCCTAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11615.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis