Browse Element(s) Details


OsAffx.11681.1.S1_at

Description tigr:9629.m05990
TID=OsAffx.11681.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6090010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g60880Os.35344.3.S1_x_at11/111+35535819..35542127transposon protein, putative, Mutator sub-class
LOC_Os01g60880Os.35344.18.S1_x_at9/111+35535819..35542127transposon protein, putative, Mutator sub-class
LOC_Os01g60880OsAffx.22940.2.S1_s_at8/111+35535819..35542127transposon protein, putative, Mutator sub-class
LOC_Os01g60880OsAffx.22940.3.S1_x_at5/111+35535819..35542127transposon protein, putative, Mutator sub-class
LOC_Os01g60880OsAffx.22940.5.S1_x_at4/111+35535819..35542127transposon protein, putative, Mutator sub-class
LOC_Os01g60880OsAffx.22940.1.S1_s_at2/111+35535819..35542127transposon protein, putative, Mutator sub-class
LOC_Os01g60890OsAffx.21772.1.S1_s_at11/111+35545907..35546374hypothetical protein
LOC_Os01g60900Os.12798.1.S1_at11/111+35551610..35553435expressed protein
LOC_Os01g60900OsAffx.11681.1.S1_at10/111+35551610..35553435expressed protein
LOC_Os01g60900Os.31147.2.S1_x_at1/111+35551610..35553435expressed protein
LOC_Os01g60910Os.32752.2.S1_s_at11/111+35555762..35561222CBL-interacting serine/threonine-protein kinase 15, putative, expressed
LOC_Os01g60910Os.32752.1.S1_at11/111+35555762..35561222CBL-interacting serine/threonine-protein kinase 15, putative, expressed
LOC_Os01g60920Os.50407.1.S1_at10/111+35564913..35567690F-box domain containing protein, expressed
LOC_Os01g60930Os.35704.1.S1_at11/111+35570772..35573426expressed protein
LOC_Os01g60940Os.35704.2.S1_at11/111+35574725..35575774expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11681.1.S1_at--700--1611Chr01:35551735..35551759 (25 bp)
AGCGGCAGTTCCATGCTAAAGCTGG
LOC_Os01g60900
OsAffx.11681.1.S1_at--300--4332Chr10:21487681..21487705 (25 bp)
CCATGCTAAAGCTGGTGGTGGCCTT
NONE
OsAffx.11681.1.S1_at--87--8631Chr01:35551757..35551781 (25 bp)
TGGTGGTGGCCTTGTGCTTCTTCGC
LOC_Os01g60900
OsAffx.11681.1.S1_at--254--7331Chr01:35551770..35551794 (25 bp)
GTGCTTCTTCGCTGTGGCCATCTCC
LOC_Os01g60900
OsAffx.11681.1.S1_at--456--8811Chr01:35551798..35551822 (25 bp)
TGTTGCGTCTGCCTCAGCTCGGGTT
LOC_Os01g60900
OsAffx.11681.1.S1_at--498--7311NONE
GTGCTGCTCCGTTTAGATTTCCGGA
NONE
OsAffx.11681.1.S1_at--331--6531Chr01:35552217..35552241 (25 bp)
GATTTCCGGACACGAGCAACAGCAT
LOC_Os01g60900
OsAffx.11681.1.S1_at--605--5951Chr01:35552230..35552254 (25 bp)
GAGCAACAGCATATTTTGGCGCTAA
LOC_Os01g60900
OsAffx.11681.1.S1_at--819--10191Chr01:35552241..35552719 (25 bp)
TATTTTGGCGCTAATCAGGATCACA
LOC_Os01g60900
OsAffx.11681.1.S1_at--562--3071Chr01:35552710..35552731 (22 bp)
AATCAGGATCACAGCTCGAGCGGGC
LOC_Os01g60900
OsAffx.11681.1.S1_at--727--2851Chr01:35552791..35552815 (25 bp)
AAGTGCGGCGCCTGCGTCCCGTGCT
LOC_Os01g60900
Target Sequence 
AGCGGCAGTTCCATGCTAAAGCTGGTGGTGGCCTTGTGCTTCTTCGCTGTGGCCATCTCCCTGTGTTGCGTCTGCCTCAG
CTCGGGTTGCGGTGGCAGTGGCTGTGGTGGATTCAGGCGGCGCGCTGTGCTGCTCCGTTTAGATTTCCGGACACGAGCAA
CAGCATATTTTGGCGCTAATCAGGATCACAGCTCGAGCGGGCGTCGATGGCGGCGGCTGCTGGCGGAGGGCCCGGGGTCG
TACCCGCCGCGGTGCACGGCCAAGTGCGGCGCCTGCGTCCCGTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11681.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis