Browse Element(s) Details


OsAffx.11687.1.S1_x_at

Description gb:NM_190467.1
DB_XREF= gi:34908017
GEN=P0460C04.19
TID=OsAffx.11687.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0460C04.19 (P0460C04.19), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6173011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g61690Os.8355.1.S1_a_at11/111+36014911..36018483Serine carboxypeptidase II precursor, putative, expressed
LOC_Os01g61700NANA1+36019649..36020635ATP-dependent Clp protease adaptor protein ClpS containing protein
LOC_Os01g61710Os.5854.1.S1_a_at10/111+36027285..36034712Coatomer delta subunit, putative, expressed
LOC_Os01g61710Os.49267.1.S1_at1/111+36027285..36034712Coatomer delta subunit, putative, expressed
LOC_Os01g61720Os.12979.1.S1_x_at11/111+36036347..36040285IQ calmodulin-binding motif family protein, expressed
LOC_Os01g61720Os.12979.2.S1_at11/111+36036347..36040285IQ calmodulin-binding motif family protein, expressed
LOC_Os01g61720Os.12979.3.S1_x_at10/111+36036347..36040285IQ calmodulin-binding motif family protein, expressed
LOC_Os01g61730OsAffx.11687.2.S1_at11/111+36041450..36041839hypothetical protein
LOC_Os01g61730OsAffx.11687.1.S1_x_at11/111+36041450..36041839hypothetical protein
LOC_Os01g61730OsAffx.11687.1.S1_at11/111+36041450..36041839hypothetical protein
LOC_Os01g61739NANA1+36045353..36046023NA
LOC_Os01g61750OsAffx.11688.1.S1_at11/111+36047568..36047939hypothetical protein
LOC_Os01g61760Os.14198.1.S1_at11/111+36047870..36053161expressed protein
LOC_Os01g61760OsAffx.20772.1.S1_at1/111+36047870..36053161expressed protein
LOC_Os01g61780Os.14624.2.S1_x_at11/111+36059514..36070531V-type ATPase 116kDa subunit family protein, expressed
LOC_Os01g61780Os.14624.1.S1_a_at11/111+36059514..36070531V-type ATPase 116kDa subunit family protein, expressed
LOC_Os01g61780Os.14624.1.S1_x_at11/111+36059514..36070531V-type ATPase 116kDa subunit family protein, expressed
LOC_Os01g61780Os.14624.1.S1_at11/111+36059514..36070531V-type ATPase 116kDa subunit family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11687.1.S1_x_at--752--10711Chr01:36041481..36041505 (25 bp)
TTGCACGTGCCGAGTGCCAGTTTGG
LOC_Os01g61730
OsAffx.11687.1.S1_x_at--466--6111Chr01:36041492..36041516 (25 bp)
GAGTGCCAGTTTGGGCAGCCGTCTC
LOC_Os01g61730
OsAffx.11687.1.S1_x_at--604--4451Chr01:36041546..36041696 (25 bp)
GCCTTTTCACCCGTTCATGAGAACG
LOC_Os01g61730
OsAffx.11687.1.S1_x_at--775--10511Chr01:36041527..36041701 (25 bp)
TTCACCCGTTCATGAGAACGTGCTG
LOC_Os01g61730
OsAffx.11687.1.S1_x_at--135--8911Chr01:36041689..36041713 (25 bp)
TGAGAACGTGCTGATCACCGAGCGC
LOC_Os01g61730
OsAffx.11687.1.S1_x_at--877--9111Chr01:36041697..36041721 (25 bp)
TGCTGATCACCGAGCGCCGAGGCGA
LOC_Os01g61730
OsAffx.11687.1.S1_x_at--35--4171Chr01:36041711..36041735 (25 bp)
CGCCGAGGCGAGAGCTTTTTCTGTC
LOC_Os01g61730
OsAffx.11687.1.S1_x_at--174--4071Chr01:36041714..36041738 (25 bp)
CGAGGCGAGAGCTTTTTCTGTCCAG
LOC_Os01g61730
OsAffx.11687.1.S1_x_at--627--4611Chr01:36041718..36041742 (25 bp)
GCGAGAGCTTTTTCTGTCCAGTCAA
LOC_Os01g61730
OsAffx.11687.1.S1_x_at--936--5991Chr01:36041720..36041744 (25 bp)
GAGAGCTTTTTCTGTCCAGTCAAAT
LOC_Os01g61730
OsAffx.11687.1.S1_x_at--560--4871Chr01:36041724..36041748 (25 bp)
GCTTTTTCTGTCCAGTCAAATACCG
LOC_Os01g61730
Target Sequence 
TTGCACGTGCCGAGTGCCAGTTTGGGCAGCCGTCTCCGGCCGCCTTTTCACCCCGGCGCGCCGCTGCCTTTTCACCCGTT
CATGAGAACGTGCTGATCACCGAGCGCCGAGGCGAGAGCTTTTTCTGTCCAGTCAAATACCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11687.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis