Browse Element(s) Details


OsAffx.11713.2.S1_at

Description gb:NM_191750.1
DB_XREF= gi:34910583
GEN=B1131B07.20
TID=OsAffx.11713.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) B1131B07.20 (B1131B07.20), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g517409/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g51700Os.40181.1.S1_at11/111+30056975..30061949Ras-related protein Rab7, putative, expressed
LOC_Os01g51700Os.40181.2.S1_s_at10/111+30056975..30061949Ras-related protein Rab7, putative, expressed
LOC_Os01g51700OsAffx.11564.1.S1_at8/111+30056975..30061949Ras-related protein Rab7, putative, expressed
LOC_Os01g51710Os.27635.3.A1_x_at11/111+30063193..30066296zinc finger protein, putative, expressed
LOC_Os01g51710Os.27635.2.S1_at11/111+30063193..30066296zinc finger protein, putative, expressed
LOC_Os01g51710OsAffx.20867.1.S1_x_at2/111+30063193..30066296zinc finger protein, putative, expressed
LOC_Os01g51720OsAffx.11565.1.S1_x_at11/111+30066970..30069374expressed protein
LOC_Os01g51720OsAffx.11565.2.S1_at11/111+30066970..30069374expressed protein
LOC_Os01g51720OsAffx.11565.1.S1_at11/111+30066970..30069374expressed protein
LOC_Os01g51730NANA1+30070919..30071218hypothetical protein
LOC_Os01g51740OsAffx.11713.2.S1_at9/111+30082096..30082680hypothetical protein
LOC_Os01g51754Os.49305.1.S1_at11/111+30087617..30096878Alpha amylase, catalytic domain containing protein, expressed
LOC_Os01g51754Os.49305.2.S1_at11/111+30087617..30096878Alpha amylase, catalytic domain containing protein, expressed
LOC_Os01g51754Os.24868.2.S1_x_at11/111+30087617..30096878Alpha amylase, catalytic domain containing protein, expressed
LOC_Os01g51754Os.49305.2.S1_x_at11/111+30087617..30096878Alpha amylase, catalytic domain containing protein, expressed
LOC_Os01g51754Os.24868.1.S1_at11/111+30087617..30096878Alpha amylase, catalytic domain containing protein, expressed
LOC_Os01g51770Os.39858.1.S1_at11/111+30097029..30100206Outer mitochondrial membrane protein porin, putative, expressed
LOC_Os01g51780OsAffx.2304.1.S1_s_at11/111+30102644..30105320Auxin efflux carrier component 3, putative, expressed
LOC_Os01g51790OsAffx.23753.1.S1_at11/111+30107126..30109995pentatricopeptide, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11713.2.S1_at--126--5391Chr01:30082140..30082164 (25 bp)
GAAGCTTACCCTTATTCTGGATCAC
LOC_Os01g51740
OsAffx.11713.2.S1_at--1157--3651Chr01:30082144..30082168 (25 bp)
CTTACCCTTATTCTGGATCACAATC
LOC_Os01g51740
OsAffx.11713.2.S1_at--317--10411Chr01:30082151..30082175 (25 bp)
TTATTCTGGATCACAATCATGAAGC
LOC_Os01g51740
OsAffx.11713.2.S1_at--96--6451Chr01:30082348..30082372 (25 bp)
GATCACTTAGCTGCAGAGTTCTGGG
LOC_Os01g51740
OsAffx.11713.2.S1_at--859--10171Chr01:30082380..30082404 (25 bp)
TATAACTGCGGGTTGCATCCTGAAT
LOC_Os01g51740
OsAffx.11713.2.S1_at--306--4671Chr01:30082387..30082411 (25 bp)
GCGGGTTGCATCCTGAATCACCTGT
LOC_Os01g51740
OsAffx.11713.2.S1_at--710--6631Chr01:30082414..30082438 (25 bp)
GTTGTCGCCTTCTACATGCGTGAGA
LOC_Os01g51740
OsAffx.11713.2.S1_at--317--611Chr01:30082429..30082453 (25 bp)
ATGCGTGAGACGCTCTTCGAAGGCT
LOC_Os01g51740
OsAffx.11713.2.S1_at--154--8911Chr01:30082434..30082458 (25 bp)
TGAGACGCTCTTCGAAGGCTACCCT
LOC_Os01g51740
OsAffx.11713.2.S1_at--1007--10231NONE
TTTGTCAGTTCCTGATCCGGCCTGA
NONE
OsAffx.11713.2.S1_at--610--8851Chr01:30083993..30084016 (24 bp)
TGATCCGGCCTGAGAGAAATCCGCT
NONE
Target Sequence 
GAAGCTTACCCTTATTCTGGATCACAATCATGAAGCCCTTGCCAGATTAGCTTCATGCTTGCTCAACAGTTCTCCAAACC
TCAAGGACCTTGAAATCATGGATCCTCTTGATATCCGCTACTCTGATCACTTAGCTGCAGAGTTCTGGGAGAAGCATATA
ACTGCGGGTTGCATCCTGAATCACCTGTCAGTTGTCGCCTTCTACATGCGTGAGACGCTCTTCGAAGGCTACCCTCGCAC
CAGCCTTTGTCAGTTCCTGATCCGGCCTGAGAGAAATCCGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11713.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis