Browse Element(s) Details


OsAffx.11747.2.A1_at

Description tigr:9629.m06526
TID=OsAffx.11747.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6581011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g65780Os.5334.2.S1_a_at11/111+38523871..38529461secondary cell wall-related glycosyltransferase family 8, putative, expressed
LOC_Os01g65790Os.32182.1.S1_at8/111+38533801..38538532Pectinesterase family protein, expressed
LOC_Os01g65790OsAffx.1382.1.S1_x_at3/111+38533801..38538532Pectinesterase family protein, expressed
LOC_Os01g65800Os.35603.1.S1_at11/111+38539707..38543983expressed protein
LOC_Os01g65810OsAffx.11747.2.A1_at11/111+38545985..38547304hypothetical protein
LOC_Os01g65820OsAffx.23929.1.S1_at11/111+38547994..38548583hypothetical protein
LOC_Os01g65830Os.9534.1.S1_at11/111+38551270..38552844Acyl-desaturase, chloroplast precursor, putative, expressed
LOC_Os01g65840Os.34903.1.S1_at11/111+38553274..38555289pentatricopeptide, putative, expressed
LOC_Os01g65850OsAffx.23930.1.S1_at11/111+38555661..38564077Type III restriction enzyme, res subunit family protein
LOC_Os01g65860Os.29810.1.S1_at11/111+38565328..38567154ANTH domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11747.2.A1_at--1032--3435Chr01:38546790..38546814 (25 bp)
CAGATATCCAACGTCCCTTAACTAA
LOC_Os01g65810
OsAffx.11747.2.A1_at--807--9691Chr01:38546825..38546849 (25 bp)
TCACAAATGGTCCTTCCGTGGTTTT
LOC_Os01g65810
OsAffx.11747.2.A1_at--426--7491Chr01:38546886..38546910 (25 bp)
GTGGGACCCATGTGGACTCCATATA
LOC_Os01g65810
OsAffx.11747.2.A1_at--1062--8111Chr01:38546899..38546923 (25 bp)
GGACTCCATATATCAGGCTGCCACA
LOC_Os01g65810
OsAffx.11747.2.A1_at--1129--5492Chr01:38546932..38546956 (25 bp)
GAACACCATGATTAGCACGGCCATC
LOC_Os01g65810
OsAffx.11747.2.A1_at--278--151Chr01:38546942..38546966 (25 bp)
ATTAGCACGGCCATCACCAGGTGTG
LOC_Os01g65810
OsAffx.11747.2.A1_at--807--1051Chr01:38546960..38546984 (25 bp)
AGGTGTGGCCGGTACTTGCAACGAA
LOC_Os01g65810
OsAffx.11747.2.A1_at--868--10671Chr01:38546975..38546999 (25 bp)
TTGCAACGAAGAAGCCGCCACAACG
LOC_Os01g65810
OsAffx.11747.2.A1_at--78--2611Chr01:38547031..38547055 (25 bp)
AACGCGGACGATATCCTTGAGCTCG
LOC_Os01g65810
OsAffx.11747.2.A1_at--755--9111Chr01:38547087..38547111 (25 bp)
TGCGGATGCGCCACAGCAAGTCGCG
LOC_Os01g65810
OsAffx.11747.2.A1_at--204--1411Chr01:38547234..38547258 (25 bp)
AGACAACCACCACCTTATTGGGCTT
LOC_Os01g65810
Target Sequence 
CAGATATCCAACGTCCCTTAACTAACCAAAACCGGTCACAAATGGTCCTTCCGTGGTTTTCACCCCGGTTTTGTCCTATG
TGGCGGCTGAGTCAGCGTGGGACCCATGTGGACTCCATATATCAGGCTGCCACATCAACGTTGAACACCATGATTAGCAC
GGCCATCACCAGGTGTGGCCGGTACTTGCAACGAAGAAGCCGCCACAACGCGCCCGACTCGTACCTCCGGTCCTCCTCGG
CAACGCGGACGATATCCTTGAGCTCGGCGTCGACGTCGGCGGTGGCCGCCCCGGCCCTGCGGATGCGCCACAGCAAGTCG
CGGGCCTCGTTGAGCCTCCCACGCAGCGTGAAGCTGTTAGGCGTGTCCGGGATGGACGCGGCGCCCACGATGACGATGAC
GGCCGAGACGATGTCGGCGCCGAGTGAGAGTGGAAGTGGCGGCGAGACAACCACCACCTTATTGGGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11747.2.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis