Browse Element(s) Details


OsAffx.11799.1.S1_at

Description tigr:9629.m06877
TID=OsAffx.11799.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6920011/11regulatory protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g69130Os.19079.1.S1_at11/111+40509609..40517730Dynamin-related protein 3A, putative, expressed
LOC_Os01g69140Os.55111.1.S1_at2/111+40519858..40521570regulatory protein, putative, expressed
LOC_Os01g69150NANA1+40523514..40524047transposon protein, putative, unclassified
LOC_Os01g69160OsAffx.23979.1.S1_at11/111+40527847..40530540regulatory protein, putative
LOC_Os01g69174OsAffx.11798.1.S1_at11/111+40531961..40533731hypothetical protein
LOC_Os01g69174OsAffx.23980.1.S1_at11/111+40531961..40533731hypothetical protein
LOC_Os01g69190Os.53267.1.S1_at11/111+40538046..40540330regulatory protein, putative, expressed
LOC_Os01g69200OsAffx.11799.1.S1_at11/111+40541950..40543266regulatory protein, putative, expressed
LOC_Os01g69210OsAffx.23981.1.S1_at11/111+40547968..40556378Mannosyl oligosaccharide glucosidase family protein, expressed
LOC_Os01g69220Os.50010.1.S1_at11/111+40557066..40560061exostosin family protein, putative, expressed
LOC_Os01g69230Os.8161.1.S1_at11/111+40562037..40565292exocyst subunit EXO70 family protein, putative, expressed
LOC_Os01g69240Os.54524.1.S1_at11/111+40565538..40567303SNF1-related protein kinase regulatory gamma subunit 1, putative, expressed
LOC_Os01g69250Os.12984.1.S1_at11/111+40567656..40571578Mitochondrial import receptor subunit TOM20, putative, expressed
LOC_Os01g69250OsAffx.23982.1.S1_at9/111+40567656..40571578Mitochondrial import receptor subunit TOM20, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0009543cellular_componentthylakoid lumen (sensu Viridiplantae)
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11799.1.S1_at--464--3411Chr01:40542606..40542706 (25 bp)
CAGCAGCGCGCGTCCATGATTGTGG
LOC_Os01g69200
OsAffx.11799.1.S1_at--498--1871Chr01:40542728..40542752 (25 bp)
ACGAGGAACACGACGCGCGTTGGCA
LOC_Os01g69200
OsAffx.11799.1.S1_at--482--6611Chr01:40542746..40542770 (25 bp)
GTTGGCATTGGCAGGACGTTGACCT
LOC_Os01g69200
OsAffx.11799.1.S1_at--1133--6631Chr01:40542763..40542787 (25 bp)
GTTGACCTGGCGTGGTTCAGGAACC
LOC_Os01g69200
OsAffx.11799.1.S1_at--545--6751Chr01:40542777..40542801 (25 bp)
GTTCAGGAACCCGATGGTGCACATC
LOC_Os01g69200
OsAffx.11799.1.S1_at--357--8131Chr01:40542813..40542837 (25 bp)
GGACATCACGACGTCGAGCGACTTC
LOC_Os01g69200
OsAffx.11799.1.S1_at--770--2471Chr01:40542874..40542898 (25 bp)
AACACCGGGTTCATCTACTTCAAGG
LOC_Os01g69200
OsAffx.11799.1.S1_at--1013--991Chr01:40543039..40543063 (25 bp)
AGGATCAGGTTCATCGACACGGCGG
LOC_Os01g69200
OsAffx.11799.1.S1_at--1006--4971Chr01:40543103..40543127 (25 bp)
GCATCGCGACCGTGCACATGACGTG
LOC_Os01g69200
OsAffx.11799.1.S1_at--889--2091Chr01:40543118..40543142 (25 bp)
ACATGACGTGCTGCATCGGGCTGGA
LOC_Os01g69200
OsAffx.11799.1.S1_at--120--5511Chr01:40543143..40543167 (25 bp)
GAACAAGCTGCACGACCTGAGGAAC
LOC_Os01g69200
Target Sequence 
CAGCAGCGCGCGTCCATGATTGTGGGAGAAACACGAGGCGTTGACGACGAGGAACACGACGCGCGTTGGCATTGGCAGGA
CGTTGACCTGGCGTGGTTCAGGAACCCGATGGTGCACATCACGGCGGCGGCGGACATCACGACGTCGAGCGACTTCTACT
TCGGCGACCCGGACGACCTGGGGAACTACCCGAACACCGGGTTCATCTACTTCAAGGCCACGCCGCGCAACGCGCGCGCC
ATGGCGTACTGGCACGCGGCGCGGCGCCGGTTCCCCGGGGAGCACGACCAGTTCGTCTTCAACGAGATCAAGCGGGAGCT
CGCCGCCGGCGCAGGCGAGGGCGGCGGCGTCGGCGTGAGGATCAGGTTCATCGACACGGCGGCGGTGAGCGGGTTCTGCC
AGCTGGGGCGGGACCTGAACCGCATCGCGACCGTGCACATGACGTGCTGCATCGGGCTGGAGAACAAGCTGCACGACCTG
AGGAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11799.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis