Browse Element(s) Details


OsAffx.11854.1.S1_x_at

Description tigr:9630.m00003
TID=OsAffx.11854.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to contains similarity to heat shock related protein gene_id:MEB5.9
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0103011/11tetratricopeptide repeat, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g01010Os.13477.1.S1_at9/112+3514..8377protein disulfide isomerases containing protein, expressed
LOC_Os02g01020Os.20689.1.S1_at11/112+9286..13896expressed protein
LOC_Os02g01030Os.11705.1.S1_at11/112+14069..18542tetratricopeptide repeat, putative, expressed
LOC_Os02g01030OsAffx.11854.1.S1_x_at11/112+14069..18542tetratricopeptide repeat, putative, expressed
LOC_Os02g01040OsAffx.24046.5.S1_x_at10/112+22133..24960hypothetical protein
LOC_Os02g01040OsAffx.24046.5.S1_at10/112+22133..24960hypothetical protein
LOC_Os02g01040OsAffx.24046.7.S1_x_at5/112+22133..24960hypothetical protein
LOC_Os02g01040OsAffx.24046.3.S1_x_at2/112+22133..24960hypothetical protein
LOC_Os02g01040OsAffx.24046.2.S1_x_at2/112+22133..24960hypothetical protein
LOC_Os02g01040Os.43764.1.A1_at1/112+22133..24960hypothetical protein
LOC_Os02g01050Os.50704.1.S1_at10/112+27436..31791retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g01050OsAffx.20303.1.S1_at7/112+27436..31791retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g01060Os.16004.1.S1_at11/112+33032..33966Harpin-induced protein 1 containing protein, expressed
LOC_Os02g01070Os.52725.1.S1_at11/112+34262..41100FG-GAP repeat-containing protein, putative, expressed
LOC_Os02g01070Os.52725.2.S1_at9/112+34262..41100FG-GAP repeat-containing protein, putative, expressed
LOC_Os02g01080Os.15409.1.S1_at11/112+42347..43816expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006913biological_processnucleocytoplasmic transport
GO:0010017biological_processred or far red light signaling pathway
GO:0005634cellular_componentnucleus
GO:0005635cellular_componentnuclear envelope
GO:0005737cellular_componentcytoplasm
GO:0030176cellular_componentintegral to endoplasmic reticulum membrane
GO:0004721molecular_functionphosphoprotein phosphatase activity
GO:0004722molecular_functionprotein serine/threonine phosphatase activity
GO:0005515molecular_functionprotein binding
GO:0016671molecular_functionoxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor
GO:0030508molecular_functionthiol-disulfide exchange intermediate activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11854.1.S1_x_at--824--6191Chr02:15423..15447 (25 bp)
GAGGAAGCTGCCCATGATCTTCACA
LOC_Os02g01030
OsAffx.11854.1.S1_x_at--1087--6411Chr02:15438..15462 (25 bp)
GATCTTCACACAGCATCGAACATGG
LOC_Os02g01030
OsAffx.11854.1.S1_x_at--190--6011Chr02:15652..15676 (25 bp)
GAGAGCTGAGCGTGACCGATTCCAT
LOC_Os02g01030
OsAffx.11854.1.S1_x_at--144--5191Chr02:16024..16048 (25 bp)
GCAATCATCAAGTCGCTCATCGGGA
LOC_Os02g01030
OsAffx.11854.1.S1_x_at--105--8571Chr02:16132..16156 (25 bp)
TGGTATGCCTGGTGGAGGTTTCCCA
LOC_Os02g01030
OsAffx.11854.1.S1_x_at--823--3671Chr02:16188..16212 (25 bp)
CTATGCCTGGAGGTGTTCCTGGGAA
LOC_Os02g01030
OsAffx.11854.1.S1_x_at--804--3151Chr02:16228..16340 (25 bp)
AATTCTGAATGACCCTGATCTGATG
LOC_Os02g01030
OsAffx.11854.1.S1_x_at--460--9471Chr02:16334..16358 (25 bp)
TCTGATGGCAGCATTTGGTGACCCT
LOC_Os02g01030
OsAffx.11854.1.S1_x_at--555--8931Chr02:16352..16376 (25 bp)
TGACCCTGAGGTTATGGCAGCTCTT
LOC_Os02g01030
OsAffx.11854.1.S1_x_at--795--7391Chr02:18126..18150 (25 bp)
GTGATGAACAATCCTGCCAGCTTTG
LOC_Os02g01030
OsAffx.11854.1.S1_x_at--542--3211Chr02:18170..18194 (25 bp)
CAAGGTGGGCCCCATCATTGCAAAG
LOC_Os02g01030
Target Sequence 
GAGGAAGCTGCCCATGATCTTCACACAGCATCGAACATGGATTATGATGATGAGATCAATGCTGTGCTCAAGAAGGTGGA
GCCTAATGCACACAAGATAATGGAACATCGCAGGAAATATGAACGGCTGCGAAAAGAGAGGGAAGAAAAGAGAGCTGAGC
GTGACCGATTCCATCGACGTGCAGAAGCACAGGCTGCTTATGACAAGGCCAAGCGGAAGGAGCAATCATCAAGTCGCTCA
TCGGGAGGTGCATCTCCCAGGGGGGGCTTCCCAGGAGGGATGCCTGGTGGAGGTTTCCCAGGAGGAATGCCTGGTGGAGG
TTTCCCAGGTGGTATGCCTGGTGGAGGTTTCCCAGGTGGGATGCCTGGTGGCTTCCCTGGGGGTGCTATGCCTGGAGGTG
TTCCTGGGAATGTCGATATGAGTAAAATTCTGAATGACCCTGATCTGATGGCAGCATTTGGTGACCCTGAGGTTATGGCA
GCTCTTCAAGATGTGATGAACAATCCTGCCAGCTTTGCGAGGCACCAAGCCAACCCCAAGGTGGGCCCCATCATTGCAAA
G

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11854.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis