Browse Element(s) Details


OsAffx.11860.1.S1_at

Description tigr:9630.m00058
TID=OsAffx.11860.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=similar to ribosomal protein S14
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0154011/11ribosomal protein S11 containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g01490NANA2+279583..285795expressed protein
LOC_Os02g01500Os.51720.1.S1_at11/112+287571..293885pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase family protein, expressed
LOC_Os02g01510Os.10215.1.S1_at11/112+295331..299167L-lactate dehydrogenase A, putative, expressed
LOC_Os02g01510OsAffx.28164.2.S1_at2/112+295331..299167L-lactate dehydrogenase A, putative, expressed
LOC_Os02g01520Os.50278.1.S1_at10/112+300074..302819IQ calmodulin-binding motif family protein, expressed
LOC_Os02g01530Os.49728.1.S1_at4/112+304089..304849hypothetical protein
LOC_Os02g01540Os.6938.1.A1_at11/112+307058..310927ribosomal protein S11 containing protein
LOC_Os02g01540OsAffx.11860.1.S1_at11/112+307058..310927ribosomal protein S11 containing protein
LOC_Os02g01550Os.49728.1.S1_at11/112+311537..316458F-box domain containing protein, expressed
LOC_Os02g01550OsAffx.19489.2.S1_x_at2/112+311537..316458F-box domain containing protein, expressed
LOC_Os02g01560Os.12238.2.S1_x_at11/112+316594..31912840S ribosomal protein S4, putative, expressed
LOC_Os02g01560Os.12238.1.S1_at11/112+316594..31912840S ribosomal protein S4, putative, expressed
LOC_Os02g01570NANA2+321074..327184retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g01580NANA2+327500..330456retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0005843cellular_componentcytosolic small ribosomal subunit (sensu Eukaryota)
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11860.1.S1_at--922--3051Chr02:308692..308716 (25 bp)
AATCTGATTGTGACGAACCATCCCC
LOC_Os02g01540
OsAffx.11860.1.S1_at--278--551Chr02:308711..308797 (25 bp)
ATCCCCGCATTGTTCTTGCGTAGGA
LOC_Os02g01540
OsAffx.11860.1.S1_at--474--1911Chr02:308801..308825 (25 bp)
ACGGACATATCTTGGGTTACCTATT
LOC_Os02g01540
OsAffx.11860.1.S1_at--805--5471Chr02:308846..308868 (23 bp)
GAACTAACATATTGCCTTGCTGTGG
LOC_Os02g01540
OsAffx.11860.1.S1_at--413--6431Chr02:309805..309829 (25 bp)
GATCTTGGGTGACTGTTTTCTGGAA
LOC_Os02g01540
OsAffx.11860.1.S1_at--744--8511Chr02:309825..309849 (25 bp)
TGGAATTCTGTCTCATTATGCTCTG
LOC_Os02g01540
OsAffx.11860.1.S1_at--665--151Chr02:309839..309863 (25 bp)
ATTATGCTCTGTGCGGCTGGAGGCA
LOC_Os02g01540
OsAffx.11860.1.S1_at--112--2091Chr02:309864..309888 (25 bp)
ACAAGACAAACACACCTGGACCTGA
LOC_Os02g01540
OsAffx.11860.1.S1_at--1109--4811Chr02:309914..309938 (25 bp)
GCTCTTGCTCGGTCTGGGATGAATA
LOC_Os02g01540
OsAffx.11860.1.S1_at--1077--6311Chr02:309931..309951 (21 bp)
GATGAATATTGGTCGCATTGGGTCC
LOC_Os02g01540
OsAffx.11860.1.S1_at--1080--10831Chr02:310553..310575 (23 bp)
TTGGGTCCAGATCACAACTTTTGCT
LOC_Os02g01540
Target Sequence 
AATCTGATTGTGACGAACCATCCCCGCATTGTTCTTGCGTAGGACAAACGGACATATCTTGGGTTACCTATTTTTGGAAT
TCTGTTGAGTTTGAACTAACATATTGCCTTGCTGTGGGAGGTGGCATGAAGATCAAAGCTGATTGTGATGAGTCATCCCC
ATATGCAGCTATGCTTGTTTCTCAAGATGTTGCACTGTGTTGCAAGTATAGGACAAATGGACAGATCTTGGGTGACTGTT
TTCTGGAATTCTGTCTCATTATGCTCTGTGCGGCTGGAGGCAACAAGACAAACACACCTGGACCTGATGCTCAATCTGCT
CTCAGGGCTCTTGCTCTTGCTCGGTCTGGGATGAATATTGGTCGCATTGGGTCCAGATCACAACTTTTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11860.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis