Browse Element(s) Details


OsAffx.11913.1.S1_at

Description tigr:9630.m00553
TID=OsAffx.11913.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to disease resistance proteins
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0624011/11Leucine Rich Repeat family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g06190Os.50946.1.S1_at11/112+3092568..3095101Leucine Rich Repeat family protein, expressed
LOC_Os02g06200OsAffx.11911.1.S1_at11/112+3097245..3099377Leucine Rich Repeat family protein, expressed
LOC_Os02g06210Os.24551.4.S1_at11/112+3106308..3108577Leucine Rich Repeat family protein, expressed
LOC_Os02g06220OsAffx.2519.1.S1_at11/112+3113443..3114237Conotoxin family protein, expressed
LOC_Os02g06230Os.51693.1.S1_at7/112+3114376..3118797retrotransposon protein, putative, unclassified
LOC_Os02g06230Os.53737.1.S1_at4/112+3114376..3118797retrotransposon protein, putative, unclassified
LOC_Os02g06240OsAffx.11913.1.S1_at11/112+3119601..3120817Leucine Rich Repeat family protein
LOC_Os02g06250OsAffx.11914.1.S1_at11/112+3124209..3126567Leucine Rich Repeat family protein
LOC_Os02g06260OsAffx.11915.2.S1_at11/112+3126964..3129254Leucine Rich Repeat family protein, expressed
LOC_Os02g06270Os.24551.4.S1_at9/112+3132848..3135043Leucine Rich Repeat family protein
LOC_Os02g06280OsAffx.24124.1.S1_at11/112+3136181..3137963Leucine Rich Repeat family protein
LOC_Os02g06280Os.46824.2.S1_at1/112+3136181..3137963Leucine Rich Repeat family protein
LOC_Os02g06290OsAffx.24125.1.S1_at11/112+3141995..3144096Rhodanese-like domain containing protein, expressed
LOC_Os02g06290OsAffx.24125.1.S1_s_at10/112+3141995..3144096Rhodanese-like domain containing protein, expressed
LOC_Os02g06300Os.14283.1.A1_at11/112+3144057..3152625GTP-binding protein LepA containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007165biological_processsignal transduction
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11913.1.S1_at--914--6351Chr02:3120226..3120250 (25 bp)
GATGCCAATGCTTCAACCTGACAAG
LOC_Os02g06240
OsAffx.11913.1.S1_at--1147--2591Chr02:3120256..3120280 (25 bp)
AACCCAATTGGATCCCAGGGCATTT
LOC_Os02g06240
OsAffx.11913.1.S1_at--402--2411Chr02:3120355..3120379 (25 bp)
AAACAACGAGCTTACCGGTGCGATC
LOC_Os02g06240
OsAffx.11913.1.S1_at--352--7231Chr02:3120372..3120396 (25 bp)
GTGCGATCCCTTCAGAGGTTGGTCA
LOC_Os02g06240
OsAffx.11913.1.S1_at--403--5591Chr02:3120400..3120424 (25 bp)
GAAATCACTCACATTGCTCAACTTG
LOC_Os02g06240
OsAffx.11913.1.S1_at--374--8131Chr02:3120443..3120467 (25 bp)
GGACAGATTCCACAGCAACTTTTCG
LOC_Os02g06240
OsAffx.11913.1.S1_at--736--7571Chr02:3120530..3120554 (25 bp)
GGGCTGAATAACCTGCACTTCCTTA
LOC_Os02g06240
OsAffx.11913.1.S1_at--1063--7451Chr02:3120603..3120627 (25 bp)
GTGTCCAGTCTTCATATCCGTATGA
LOC_Os02g06240
OsAffx.11913.1.S1_at--816--551Chr02:3120618..3120642 (25 bp)
ATCCGTATGATTTTTCTGGCAACCC
LOC_Os02g06240
OsAffx.11913.1.S1_at--762--2351Chr02:3120643..3120667 (25 bp)
AAAGCTGTGTGATCCTACACTCACT
LOC_Os02g06240
OsAffx.11913.1.S1_at--762--2791Chr02:3120731..3120755 (25 bp)
AAGATCGTCTTTGCAATCGCTTTCG
LOC_Os02g06240
Target Sequence 
GATGCCAATGCTTCAACCTGACAAGGTTGCAACCCAATTGGATCCCAGGGCATTTGAACAGCCTGTCTATGCAGGGCCAT
CACTTACATATGGCAAGAACAATGCTCTCCCTGCAATGCTGAATCTTGCAAACAACGAGCTTACCGGTGCGATCCCTTCA
GAGGTTGGTCAGCTGAAATCACTCACATTGCTCAACTTGAGCTTCAACAGCTTGTCAGGACAGATTCCACAGCAACTTTT
CGACCTGACAAACCTGCAGGTGGTAGACTTGTCCAACAACCATCTCTCAGGTTCAATTCCACCGGGGCTGAATAACCTGC
ACTTCCTTACAACATTTGATGCTTCTAACAACGACTTAGAGGGGTGGATTCCAGCTGGTGTCCAGTCTTCATATCCGTAT
GATTTTTCTGGCAACCCAAAGCTGTGTGATCCTACACTCACTCGCACCTGTGATTCAGCAGAGGCACCTCCAGTCTCCAC
GCTCACCGGAGAAGAAACCACTCCAAAGATCGTCTTTGCAATCGCTTTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11913.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis