Browse Element(s) Details


OsAffx.11914.1.S1_at

Description tigr:9630.m00554
TID=OsAffx.11914.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AY064019 putative receptor protein kinase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0625011/11Leucine Rich Repeat family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g06200OsAffx.11911.1.S1_at11/112+3097245..3099377Leucine Rich Repeat family protein, expressed
LOC_Os02g06210Os.24551.4.S1_at11/112+3106308..3108577Leucine Rich Repeat family protein, expressed
LOC_Os02g06220OsAffx.2519.1.S1_at11/112+3113443..3114237Conotoxin family protein, expressed
LOC_Os02g06230Os.51693.1.S1_at7/112+3114376..3118797retrotransposon protein, putative, unclassified
LOC_Os02g06230Os.53737.1.S1_at4/112+3114376..3118797retrotransposon protein, putative, unclassified
LOC_Os02g06240OsAffx.11913.1.S1_at11/112+3119601..3120817Leucine Rich Repeat family protein
LOC_Os02g06250OsAffx.11914.1.S1_at11/112+3124209..3126567Leucine Rich Repeat family protein
LOC_Os02g06260OsAffx.11915.2.S1_at11/112+3126964..3129254Leucine Rich Repeat family protein, expressed
LOC_Os02g06270Os.24551.4.S1_at9/112+3132848..3135043Leucine Rich Repeat family protein
LOC_Os02g06280OsAffx.24124.1.S1_at11/112+3136181..3137963Leucine Rich Repeat family protein
LOC_Os02g06280Os.46824.2.S1_at1/112+3136181..3137963Leucine Rich Repeat family protein
LOC_Os02g06290OsAffx.24125.1.S1_at11/112+3141995..3144096Rhodanese-like domain containing protein, expressed
LOC_Os02g06290OsAffx.24125.1.S1_s_at10/112+3141995..3144096Rhodanese-like domain containing protein, expressed
LOC_Os02g06300Os.14283.1.A1_at11/112+3144057..3152625GTP-binding protein LepA containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007165biological_processsignal transduction
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11914.1.S1_at--511--3011Chr02:3124905..3124929 (25 bp)
AATGCTTTCCCCATAATGCTGGATC
LOC_Os02g06250
OsAffx.11914.1.S1_at--47--2251Chr02:3124869..3124893 (25 bp)
AAATTCACTGGTTTGATCCCTCCAG
LOC_Os02g06250
OsAffx.11914.1.S1_at--453--5571Chr02:3124831..3124855 (25 bp)
GAAAGGGCTCCTTGAACTCAATTTG
LOC_Os02g06250
OsAffx.11914.1.S1_at--795--431Chr02:3124754..3124778 (25 bp)
ATCTGCTAACACTGGATTTATCAAG
LOC_Os02g06250
OsAffx.11914.1.S1_at--530--3691Chr02:3124640..3124664 (25 bp)
CTATCCCAACTGAAGGCCAGCTTAG
LOC_Os02g06250
OsAffx.11914.1.S1_at--1125--8431Chr02:3124626..3124650 (25 bp)
GGCCAGCTTAGCACATTCACAGATT
LOC_Os02g06250
OsAffx.11914.1.S1_at--743--791Chr02:3124579..3124603 (25 bp)
ATGTGGTCCTATGCTCAGTCACCGT
LOC_Os02g06250
OsAffx.11914.1.S1_at--489--9631Chr02:3124565..3124589 (25 bp)
TCAGTCACCGTTGTAGTTCAGCAAA
LOC_Os02g06250
OsAffx.11914.1.S1_at--95--4471Chr02:3124524..3124548 (25 bp)
GCCTCTACTCTATCCACAGGTGAAT
LOC_Os02g06250
OsAffx.11914.1.S1_at--876--411Chr02:3124485..3124509 (25 bp)
ATCTTTGGTATCACAGTAGGCCTGT
LOC_Os02g06250
OsAffx.11914.1.S1_at--103--5491Chr02:3124269..3124293 (25 bp)
GAACATTCCGGATGATGGTCACTAC
LOC_Os02g06250
Target Sequence 
AATGCTTTCCCCATAATGCTGGATCTAGGCAGCAATAAATTCACTGGTTTGATCCCTCCAGAGATTGGTCAGTTGAAAGG
GCTCCTTGAACTCAATTTGAGCGCTAACAAATTATATGGAGATATCCCCCAGTCGATCTGCAACCTCACAAATCTGCTAA
CACTGGATTTATCAAGCAACAAACTATCTGGTACAATCCCAGCAGCACTGAAAAATCTAAACTTCCTAACCAGATTCAAC
ATTTCTTACAATGACCTAGAAGGGCCTATCCCAACTGAAGGCCAGCTTAGCACATTCACAGATTGCTTCATTGGTAATCC
AAAGCTATGTGGTCCTATGCTCAGTCACCGTTGTAGTTCAGCAAAAGCAGTTCCTGCGCCTGCCTCTACTCTATCCACAG
GTGAATTCAGTGACAAGGTTATCTTTGGTATCACAGTAGGCCTGTTCTTTGCACTTGGTGTGCTGTTAGATCAGATGGTG
TTCAGCAGAATGAACATTCCGGATGATGGTCACTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11914.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis