Browse Element(s) Details


OsAffx.11948.1.S1_at

Description tigr:9630.m00833
TID=OsAffx.11948.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Cytochrome P450
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0920011/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g09160OsAffx.24170.1.S1_at11/112+4704820..4706525hypothetical protein
LOC_Os02g09160OsAffx.30475.1.S1_s_at4/112+4704820..4706525hypothetical protein
LOC_Os02g09160OsAffx.2812.1.S1_at1/112+4704820..4706525hypothetical protein
LOC_Os02g09170Os.22727.1.S1_at11/112+4708490..4716877Sucrose-phosphate synthase 1, putative, expressed
LOC_Os02g09180Os.7561.1.S1_at11/112+4717683..4720604CUE domain containing protein, expressed
LOC_Os02g09190OsAffx.11947.1.S1_at11/112+4721029..4722709Cytochrome P450 family protein, expressed
LOC_Os02g09200OsAffx.11948.1.S1_at11/112+4724316..4726012Cytochrome P450 family protein, expressed
LOC_Os02g09210OsAffx.11949.1.S1_at11/112+4729991..4730317hypothetical protein
LOC_Os02g09220Os.53919.1.S1_at11/112+4740046..4743110Cytochrome P450 family protein, expressed
LOC_Os02g09220Os.54895.1.S1_x_at1/112+4740046..4743110Cytochrome P450 family protein, expressed
LOC_Os02g09230OsAffx.24171.1.S1_at11/112+4747250..4748210hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11948.1.S1_at--1117--1631Chr02:4724892..4724916 (25 bp)
AGCGACTACAATCCAATGGGCCATG
LOC_Os02g09200
OsAffx.11948.1.S1_at--1160--1191Chr02:4724821..4724845 (25 bp)
AGTTACGCGACAATCTCCAAGGGAA
LOC_Os02g09200
OsAffx.11948.1.S1_at--1144--5811Chr02:4724787..4724811 (25 bp)
GACCGAGGAAGACTTGACCGACCTA
LOC_Os02g09200
OsAffx.11948.1.S1_at--754--1351Chr02:4724739..4724763 (25 bp)
AGAGACGCTGAGGTTGCATCTGCCA
LOC_Os02g09200
OsAffx.11948.1.S1_at--567--7211Chr02:4724691..4724715 (25 bp)
GTCGAGGGAGTCATGCAAGATCTTT
LOC_Os02g09200
OsAffx.11948.1.S1_at--1029--7271Chr02:4724657..4724681 (25 bp)
GTGCCAAAAGGTACCACTGTGCTTG
LOC_Os02g09200
OsAffx.11948.1.S1_at--35--1971Chr02:4724642..4724666 (25 bp)
ACTGTGCTTGTTAACGCTTGGGCAA
LOC_Os02g09200
OsAffx.11948.1.S1_at--836--4111Chr02:4724586..4724610 (25 bp)
CGAAGAGTTCAAGCCTGAGCGATTT
LOC_Os02g09200
OsAffx.11948.1.S1_at--39--2051Chr02:4724530..4724554 (25 bp)
ACTTTGAGTTCTTGCCATTTGGGTC
LOC_Os02g09200
OsAffx.11948.1.S1_at--188--791Chr02:4724495..4724519 (25 bp)
ATGTGTCCTGGTATAATGTTCGCGC
LOC_Os02g09200
OsAffx.11948.1.S1_at--721--1451Chr02:4724350..4724374 (25 bp)
AGAATGACCTATACCTACATGCCGT
LOC_Os02g09200
Target Sequence 
AGCGACTACAATCCAATGGGCCATGTCGGAGCTCATGAGGAACCCAAGAGTGATGAAGAGAGCGCAAGCTGAGTTACGCG
ACAATCTCCAAGGGAAGCCAAAGGTGACCGAGGAAGACTTGACCGACCTAAATTACCTAAAGCTCATTATCAAAGAGACG
CTGAGGTTGCATCTGCCAGCGCCTTTGCTCCTTCCTAGGGAGTCGAGGGAGTCATGCAAGATCTTTGGATATGATGTGCC
AAAAGGTACCACTGTGCTTGTTAACGCTTGGGCAATTGGTAGAGATCCTAAGTATTGGGATGACCCCGAAGAGTTCAAGC
CTGAGCGATTTGAGGATAGCAAGATTGACTTTAAGGGTTTGGACTTTGAGTTCTTGCCATTTGGGTCTGGACGGAGAATG
TGTCCTGGTATAATGTTCGCGCAGCCGAACATAGAACTCGCGCTCGCCACCCTTCTCTACCACTTCGATTGGAGCCTCCC
TGCTGGGGTGAAGCCAAGTGAGCTAGATATGACCGAGGAGATGGGCATCACTGTTAGGAGGAAGAATGACCTATACCTAC
ATGCCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11948.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis