Browse Element(s) Details


OsAffx.11989.1.S1_at

Description tigr:9630.m01048
TID=OsAffx.11989.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1167011/11Flavonol-3-O-glycoside-7-O-glucosyltransferase 1, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g11640OsAffx.11989.2.S1_s_at11/112+5978154..5979949Flavonol-3-O-glycoside-7-O-glucosyltransferase 1, putative, expressed
LOC_Os02g11650Os.31845.1.S1_x_at1/112+5983252..5986466hypothetical protein
LOC_Os02g11660OsAffx.22699.1.S1_x_at3/112+5987067..5993073retrotransposon protein, putative, unclassified
LOC_Os02g11660Os.45161.1.A1_x_at2/112+5987067..5993073retrotransposon protein, putative, unclassified
LOC_Os02g11660Os.52731.1.S1_at1/112+5987067..5993073retrotransposon protein, putative, unclassified
LOC_Os02g11670OsAffx.11989.1.S1_at11/112+6002790..6003758Flavonol-3-O-glycoside-7-O-glucosyltransferase 1, putative
LOC_Os02g11680Os.49093.2.S1_x_at1/112+6007681..6009069hypothetical protein
LOC_Os02g11689NANA2+6011238..6012129NA
LOC_Os02g11700OsAffx.11989.2.S1_s_at1/112+6017329..6018855Cytokinin-O-glucosyltransferase 1, putative, expressed
LOC_Os02g11710Os.50043.1.A1_at1/112+6023906..6025522hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11989.1.S1_at--758--5651Chr02:6002847..6002871 (25 bp)
GACATGATCCAAAAGGTCCCCAAGT
LOC_Os02g11670
OsAffx.11989.1.S1_at--524--4911Chr02:6003064..6003088 (25 bp)
GCTTCGTCACCCATTGTGGCTGTAA
LOC_Os02g11670
OsAffx.11989.1.S1_at--509--31Chr02:6003076..6003100 (25 bp)
ATTGTGGCTGTAACTCGATTCTGGA
LOC_Os02g11670
OsAffx.11989.1.S1_at--377--6571Chr02:6003092..6003116 (25 bp)
GATTCTGGAGGACATCACCCATGGC
LOC_Os02g11670
OsAffx.11989.1.S1_at--850--371Chr02:6003105..6003129 (25 bp)
ATCACCCATGGCGTGCCGGTCGTAA
LOC_Os02g11670
OsAffx.11989.1.S1_at--8--9191Chr02:6003118..6003142 (25 bp)
TGCCGGTCGTAACGTGGCCGCACAT
LOC_Os02g11670
OsAffx.11989.1.S1_at--231--4491Chr02:6003641..6003662 (22 bp)
GCCGGAAGCACGACTGCCTGTGGTA
LOC_Os02g11670
OsAffx.11989.1.S1_at--349--1991Chr02:6003650..6003674 (25 bp)
ACTGCCTGTGGTAACTGCTGTTAAG
LOC_Os02g11670
OsAffx.11989.1.S1_at--616--7051Chr02:6003660..6003684 (25 bp)
GTAACTGCTGTTAAGATAAACCCTT
LOC_Os02g11670
OsAffx.11989.1.S1_at--492--9691Chr02:6003671..6003695 (25 bp)
TAAGATAAACCCTTATCTCTACCGG
LOC_Os02g11670
OsAffx.11989.1.S1_at--932--10331Chr02:6003683..6003707 (25 bp)
TTATCTCTACCGGTACTTGGGAAGT
LOC_Os02g11670
Target Sequence 
GACATGATCCAAAAGGTCCCCAAGTACTTGTTCGAGGTCGGCCATGGCCTGGAGGACTCCGGCAAGCCGTTCATCTGGGT
GGTGAAGGTGTCGGAGGTGGCCACGCCGGAGGTGCAAGAATGGCTGTCCGCGCTGGAGGCGCGCGTGGCGGGGCGCGGCG
TCGTGGTCCGCGGGTGGGCGCCGCAGCTCGCCATCCTGTCGCACCGCGCCGTCGGTGGCTTCGTCACCCATTGTGGCTGT
AACTCGATTCTGGAGGACATCACCCATGGCGTGCCGGTCGTAACGTGGCCGCACATCTCCGACCAGTTCCTAAACGAGCG
GCTCGCCGTCGACGTGCTCGGCGTCGGCGTGCCGGAAGCACGACTGCCTGTGGTAACTGCTGTTAAGATAAACCCTTATC
TCTACCGGTACTTGGGAAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11989.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis