Browse Element(s) Details


Os.49093.2.S1_x_at

Description gb:AK109733.1
DB_XREF= gi:32994942
TID=Os.49093.2
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49093 (NCBI UniGene Cluster)
UG_TITLE=Nrt2 mRNA for high affinity nitrate transporter, complete cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-146-C04, full insert sequence.
FL= gb:AK109733.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0219011/11High affinity nitrate transporter, putative, expressed
LOC_Os02g021708/11High affinity nitrate transporter, putative, expressed
LOC_Os02g116801/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g02150Os.49918.1.S1_at11/112+646112..649305DEAD/DEAH box helicase family protein, expressed
LOC_Os02g02160OsAffx.24060.1.S1_at11/112+650534..651349expressed protein
LOC_Os02g02170Os.49093.1.S1_a_at11/112+655324..657243High affinity nitrate transporter, putative, expressed
LOC_Os02g02170Os.49093.1.S1_at10/112+655324..657243High affinity nitrate transporter, putative, expressed
LOC_Os02g02170Os.49093.2.S1_x_at8/112+655324..657243High affinity nitrate transporter, putative, expressed
LOC_Os02g02180NANA2+659690..660670hypothetical protein
LOC_Os02g02190Os.49093.1.S1_a_at11/112+667264..669053High affinity nitrate transporter, putative, expressed
LOC_Os02g02190Os.49093.2.S1_x_at11/112+667264..669053High affinity nitrate transporter, putative, expressed
LOC_Os02g02200OsAffx.28270.5.S1_x_at11/112+676466..677742pathogenesis-related thaumatin family protein, putative
LOC_Os02g02200OsAffx.28270.5.S1_at11/112+676466..677742pathogenesis-related thaumatin family protein, putative
LOC_Os02g02210Os.2821.1.A1_s_at11/112+679452..697350aminotransferase, class III family protein, expressed
LOC_Os02g02210Os.2821.1.A1_at11/112+679452..697350aminotransferase, class III family protein, expressed
LOC_Os02g02210OsAffx.21870.2.S1_x_at8/112+679452..697350aminotransferase, class III family protein, expressed
LOC_Os02g02210OsAffx.21870.3.S1_x_at7/112+679452..697350aminotransferase, class III family protein, expressed
LOC_Os02g02210Os.38172.1.S1_x_at2/112+679452..697350aminotransferase, class III family protein, expressed
LOC_Os02g02210OsAffx.29532.2.S1_x_at1/112+679452..697350aminotransferase, class III family protein, expressed
LOC_Os02g02210OsAffx.29532.2.S1_at1/112+679452..697350aminotransferase, class III family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0015706biological_processnitrate transport
GO:0048527biological_processlateral root development
GO:0016020cellular_componentmembrane
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0015112molecular_functionnitrate transporter activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016758molecular_functiontransferase activity, transferring hexosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49093.2.S1_x_at--370--9453Chr02:6009005..6009029 (25 bp)
TCGGCATCATCTCCGGCATGACCGG
LOC_Os02g11680
Os.49093.2.S1_x_at--437--9093Chr02:656705..656729 (25 bp)
TGCTCTTCTTCACGTCGTCGAGGTA
LOC_Os02g02170
Os.49093.2.S1_x_at--816--9393Chr02:6009079..6009103 (25 bp)
TCGTCGAGGTACTCCACGGGCACGG
NONE
Os.49093.2.S1_x_at--136--7033Chr02:6009111..6009135 (25 bp)
GTACATGGGCATCATGATCATGGCG
NONE
Os.49093.2.S1_x_at--929--7312Chr02:656791..656815 (25 bp)
GTGCTCGTCCATTTCCCGCAGTGGG
LOC_Os02g02170
Os.49093.2.S1_x_at--937--6172Chr02:656851..656875 (25 bp)
GAGGAGCACTACTACGGCTCCGAGT
LOC_Os02g02170
Os.49093.2.S1_x_at--319--7552Chr02:656898..656922 (25 bp)
GGGCCTCCACGGTGCAAGTCTCAAG
LOC_Os02g02170
Os.49093.2.S1_x_at--511--7352Chr02:656909..656933 (25 bp)
GTGCAAGTCTCAAGTTCGCCGAGAA
LOC_Os02g02170
Os.49093.2.S1_x_at--303--8071Chr02:667349..667373 (25 bp)
GGAGCACGCCTAATTAAGAGGCCAA
LOC_Os02g02190
Os.49093.2.S1_x_at--321--8771Chr02:667283..667307 (25 bp)
TGTTACCGTTTTCTTTATACTATCT
LOC_Os02g02190
Os.49093.2.S1_x_at--454--2031Chr02:667265..667289 (25 bp)
ACTATCTAGAGTATGTCGTCATGGA
LOC_Os02g02190
Target Sequence 
TCGGCATCATCTCCGGCATGACCGGCGCCGGCGGCAACTTCGGCGCNGGGCTCACGCAGCTGCTCTTCTTCACGTCGTCG
AGGTACTCCACGGGCACGGGGCTGGAGTACATGGGCATCATGATCATGGCGTGCACGCTGCCGGTGGTGCTCGTCCATTT
CCCGCAGTGGGGCTCCATGTTCCTCCCGCCCAACGCCGGCGCCGAGGAGGAGCACTACTACGGCTCCGAGTGGAGCGAAC
AGGAGAAGAGCAAGGGCCTCCACGGTGCAAGTCTCAAGTTCGCCGAGAACTCCCGCTCCGAGCGTGGCCGCCGCAACGTC
ATCAACGCCGCCGCCGCCGCCGCCACGCCGCCCAACAACTCGCCGGAGCACGCCTAATTAAGAGGCCAAGTTAATTAATT
ATGCATGCATGNATNAACTGTTGAACGTTTTGTTACCGTTTTCTTTATACTATCTAGAGTATGTCGTCATGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49093.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis